Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,635,709 C→T 100% G16D (GGT→GAT)  uvrY ← BarA/UvrY two‑componenent system response regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,635,7090CT100.0% 191.2 / NA 57G16D (GGT→GAT) uvrYBarA/UvrY two‑componenent system response regulator
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (30/27);  total (30/27)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CCTCCAGGCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAACGCATTGCTTCCTTCAGAAACGACTGACGTTC  >  NC_002947/4635563‑4635854
                                                                                                                                                  |                                                                                                                                                 
ccTCCAGGCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCg                                                                                                                                                 <  2:215526/149‑1 (MQ=255)
 cTCCAGGCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCgg                                                                                                                                                >  2:855/1‑149 (MQ=255)
 cTCCAGGCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCgg                                                                                                                                                >  8:213180/1‑149 (MQ=255)
  tCCAGGCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGt                                                                                                                                               >  7:232010/1‑149 (MQ=255)
  tCCAGGCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCCGTTTCAGCTCCCTGGCCAGTTTCAGTGCCGACTCGCCGGAAAGTCCCTCACCCCCCAACTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGt                                                                                                                                               >  3:405882/1‑149 (MQ=255)
    cAGTCCGCCGTTTCCGTTAATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGt                                                                                                                                               <  6:304336/147‑1 (MQ=255)
    cAGGCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTc                                                                                                                                             <  8:232010/149‑1 (MQ=255)
       gccgccGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTa                                                                                                                                          >  3:412040/1‑149 (MQ=255)
              aTGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATc                                                                                                                                   <  1:133911/149‑1 (MQ=255)
                 ccGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTg                                                                                                                                <  1:129398/149‑1 (MQ=255)
                   gggCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGat                                                                                                                              >  4:62982/1‑149 (MQ=255)
                        ttttCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCg                                                                                                                         <  8:281421/149‑1 (MQ=255)
                         tttCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGa                                                                                                                        >  6:259770/1‑149 (MQ=255)
                           tCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCa                                                                                                                                       >  2:83462/1‑132 (MQ=255)
                           tCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCa                                                                                                                                       <  1:83462/132‑1 (MQ=255)
                             acaTCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCa                                                                                                                     >  3:25109/1‑148 (MQ=255)
                                  catcAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGa                                                                                                               <  7:213180/149‑1 (MQ=255)
                                   atcAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGatcat                                                                                                                           >  2:381778/1‑136 (MQ=255)
                                   atcAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGAc                                                                                                              <  5:17156/149‑1 (MQ=255)
                                    tcAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGAcc                                                                                                             <  5:259770/149‑1 (MQ=255)
                                    tcAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGGCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGAcc                                                                                                             <  5:327226/149‑1 (MQ=255)
                                      aGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGAccc                                                                                                            <  3:62982/148‑1 (MQ=255)
                                         acaACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTaa                                                                                                         >  5:295173/1‑148 (MQ=255)
                                          caACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCa                                                                                                                     <  8:402169/135‑1 (MQ=255)
                                              gTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGc                                                                                                   <  3:126957/149‑1 (MQ=255)
                                                 cGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGcac                                                                                                 <  4:412040/148‑1 (MQ=255)
                                                        aGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCg                                                                                         >  5:295298/1‑149 (MQ=255)
                                                             ccGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTcag                                                                                     <  6:295298/148‑1 (MQ=255)
                                                                ggCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAgg                                                                                 <  1:855/149‑1 (MQ=255)
                                                                    aGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGa                                                                             >  5:393532/1‑149 (MQ=255)
                                                                     gTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGAt                                                                            >  8:4836/1‑149 (MQ=255)
                                                                           gTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATc                                                                      >  2:274779/1‑149 (MQ=255)
                                                                                     gCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCt                                                             >  6:387722/1‑148 (MQ=255)
                                                                                      ccGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCtt                                                            >  2:302983/1‑148 (MQ=255)
                                                                                              tcCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAAtt                                                   >  5:72022/1‑149 (MQ=255)
                                                                                              tcCCTCACCCACCACCTGCAGGCCGTCGATGACGGCCAACATCCAAGTAATATCGGTTCGTACCAGATCGAGATCATCGACCACAAAGACCCTAATCAAACACCCACCACGTCAGCAGGGCGATTGGATCCCCCCACCATAACAAAAtt                                                   >  2:392169/1‑149 (MQ=255)
                                                                                                ccTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAAtttt                                                 >  3:408789/1‑149 (MQ=255)
                                                                                                ccTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAAt                                                    <  4:25109/146‑1 (MQ=255)
                                                                                                 cgcacccaccACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGCAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAACACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAAttttt                                                <  4:405882/147‑1 (MQ=255)
                                                                                                 cTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAAttttt                                                <  6:393532/149‑1 (MQ=255)
                                                                                                  tCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAAttttt                                                >  2:106092/1‑148 (MQ=255)
                                                                                                        accaccTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTg                                         >  6:6841/1‑149 (MQ=255)
                                                                                                           accTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGc                                      <  5:6841/149‑1 (MQ=255)
                                                                                                               gCAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACCAATCGTCAGCAGGGCGATTGGATCCCGCCACCTGAACAAAATATTTAACGGTGGGCCTaa                                  >  2:340228/1‑149 (MQ=255)
                                                                                                                cAGGCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAAc                                 >  4:381622/1‑149 (MQ=255)
                                                                                                                   gCCGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTACTCAAGCCCACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACACAATTTTTCACCGTGGGCCTAACCCa                              >  7:112328/1‑149 (MQ=255)
                                                                                                                     cGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAACGCAtt                            <  7:4836/149‑1 (MQ=255)
                                                                                                                     cGTCGATGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCAAACACCTCGTCATCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTTTGCCTAACGCAtt                            <  7:143170/149‑1 (MQ=255)
                                                                                                                          aTGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAggg                                                                                <  6:125066/92‑1 (MQ=255)
                                                                                                                          aTGTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAggg                                                                                >  5:125066/1‑92 (MQ=255)
                                                                                                                            gTCGGCCAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAACGCATTGcttcc                      <  6:72022/148‑1 (MQ=255)
                                                                                                                                 ccAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAACGCATTGcttcc                      >  7:211899/1‑143 (MQ=255)
                                                                                                                                 ccAACATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAACGCATTGcttcc                      <  8:211899/143‑1 (MQ=255)
                                                                                                                                    aCATCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAACGCATTGCTTCCTTCAGAAAc             <  3:381622/149‑1 (MQ=255)
                                                                                                                                       tCCGTGTAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAACGCATTGCTTCCTTCAGAAACGAc          >  1:246123/1‑149 (MQ=255)
                                                                                                                                        ccGTGTAATATCGGTTCGTACAACATCGTGATGATGGACCACTATGCCACTAATAGCTCAACCACCTCGTCAGCAGGGCGATTGGATCCCGCGACCTTAACATAATTATTCAGGGTGGGGCTAACGCATTGCTTCCTTCAGGACCGACt         >  8:51036/1‑149 (MQ=255)
                                                                                                                                          gtgtAATATCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAACGCATTGCTTCCTTCAGAAACGACTGa       >  7:191471/1‑149 (MQ=255)
                                                                                                                                               atatCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGTCCTAACGCATTGCTTCCTTCAGAAACGACTGACGTTc  >  3:259101/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
CCTCCAGGCCGCCGATGCCGGGCATTTTCACATCCATCAGCACAACGTCCGGTTTCAGCTCCCGGGCCAGTTTCAGTGCCGACTCGCCGGAATCTCCCTCACCCACCACCTGCAGGCCGTCGATGTCGGCCAACATCCGTGTAATACCGGTTCGTACCAGATCGTGATCATCGACCACTAAGACCCTAATCAAGCACACACCTCGTCAGCAGGGCGATTGGATCCCGCCACCTTAACAAAATTTTTCACGGTGGGCCTAACGCATTGCTTCCTTCAGAAACGACTGACGTTC  >  NC_002947/4635563‑4635854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑