| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 94.4% | 52.0 / ‑2.9 | 18 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (8/9); total (9/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGG > NC_002947/278596‑278881 | tGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑t > 3:258036/1‑147 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGTGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACAt > 4:192244/1‑148 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGGTCCTAaccaca > 6:194606/1‑147 (MQ=255) cAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATg < 5:157363/147‑1 (MQ=255) cTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATc < 3:195372/147‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCtgt < 3:286298/147‑1 (MQ=255) tggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAAAACGCTCCTACACACATGCCTCAAGATCTGTGCACTg > 3:232830/1‑147 (MQ=255) tccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAAAACCCTCCTACACACATTCCTCAAGATCTGTGCACTGTAgg > 7:119536/1‑148 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCtg > 8:119005/1‑132 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCtg < 7:119005/132‑1 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 3:126067/148‑1 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAc < 7:228800/148‑1 (MQ=255) cTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCCCTACTACACACAATCCTAAAGATATTTGAACTTTATGAGAGGGTTTAACcgc > 4:32239/1‑148 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAAAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgcg > 1:22476/1‑147 (MQ=255) taAAATTTTTATTAACTAACTTTTTGTAATATTTATATAAGGGGTTTTTGTTACAGAGGTGCGGGGCTCTTCGCGGT‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGTTTTACCCGCGAAAGGGCCg < 4:232830/147‑1 (MQ=255) ttGTAATATATATAGAAGGGGTATTTGTTACAGAGGGGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAACATCTGTGCACTGTAGCCGCGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGc < 3:32239/147‑1 (MQ=38) gggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTT‑AAACCCCAGCTAAAACCCAGCCACAAGAACGGGGCGCGGTAGGGGCGGGTTTACCCCCGGAAGGGGCGGGACAGGTTTTCGGGGAGGCCGCAGTGCCGAGGGACTTgcgc > 8:49966/1‑147 (MQ=255) caaagGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcg < 2:22476/144‑1 (MQ=255) tCGCGGG‑TAAAACCCCTCCTACACACAAGCCTCAAGATCTGTGCACGGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGAACAGGGTTTCAAGGAGGCCGCAGTCCCGAGGCACTTGCGCAAGGACTGCCGCGTACGCGCGTCCTTCgg > 8:23618/1‑148 (MQ=255) | TGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGG > NC_002947/278596‑278881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |