New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5093419 = | 81 (1.410) | 5 (0.090) | 3/274 | 5.8 | 6.0% | coding (203/981 nt) | PP_4482 | AraC family transcriptional regulator |
? | NC_002947 | 5093466 = | 77 (1.380) | coding (156/981 nt) | PP_4482 | AraC family transcriptional regulator | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CCTGGCGTTGGCCGAGGAAGTGTTGCTGGTGGCGCAGCGTGTGCATCCGGATGTGGTCTACGAGTTGGTCTTCCTGCAGGCCGAGCCTGCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5093568‑5093419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCT > NC_002947/5093466‑5093611 CCTGGCGTTGGCCGAGGAAGTGTTGCTGGTGGCGCAGCGTGTGCATCCGGATGTGGTCTACGAGTTGGTCTTCCTGCAGGCCGAGCCTGCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTG > 5:283199/1‑147 GCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAA > 1:139983/1‑148 CCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAA < 1:222297/145‑1 CCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAA > 2:222297/1‑145 CCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAA > 3:131110/1‑145 CCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAA < 4:131110/145‑1 CAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCT > 3:68826/1‑148 CCTGGCGTTGGCCGAGGAAGTGTTGCTGGTGGCGCAGCGTGTGCATCCGGATGTGGTCTACGAGTTGGTCTTCCTGCAGGCCGAGCCTGCGCAGGAAGGCGCCTGGCGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5093568‑5093419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCT > NC_002947/5093466‑5093611 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |