New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 562241282 (1.430)4 (0.080) 4/260 5.2 5.2% coding (1326/1404 nt) PP_4941 hypothetical protein
?NC_002947 = 5622499 69 (1.310)coding (1239/1404 nt) PP_4941 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCTTCTGCACCAGAAATAGGACTTTCATTGCTTTCCTTGGGCGCTCTGCGCCTTCGCGGTCAACCATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5622257‑5622412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcgatggcCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACACGAACTGT  <  NC_002947/5622499‑5622354
                                                                                                                                                                                                                                                                                                              
TCCTTCTGCACCAGAAATAGGACTTTCATTGCTTTCCTTGGGCGCTCTGCGCCTTCGCGGTCAACCATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAG                                                                                                                                                            >  7:241812/1‑148
  CTTCTGCACCAGAAATAGGACTTTCATTGCTTTCCTTGGGCGCTCTGCGCCTTCGCGGTCAACCATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGC                                                                                                                                                          >  7:302549/1‑148
  CTTCTGCACCAGAAATAGGACTTTCATTGCTTTCCTTGGGCGCTCTGCGCCTTCGCGGTCAACCATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGG                                                                                                                                                           >  5:316059/1‑147
   TTCTGCACCAGAAATAGGACTTTCATTGCTTTCCTTGGGCGCTCTGCGCCTTCGCGGTCAACCATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGC                                                                                                                                                          >  7:301468/1‑147
    TCTGCACCAGAAATAGGACTTTCATTGCTTTCCTTGGGCGCTCTGCGCCTTCGCGGTCAACCATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGCGA                                                                                                                                                        >  2:218875/1‑148
    TCTGCACCAGAAATAGGACTTTCATTGCTTTCCTTGGGCGCTCTGCGCCTTCGCGGTCAACCATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGCG                                                                                                                                                         >  6:193706/1‑147
         ACCAGAAATAGGACTTTCATTGCTTTCCTTGGGCGCTCTGCGCCTTCGCGGTCAACCATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGCGATGGC                                                                                                                                                    <  6:147352/147‑1
                                                                 CATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGCGATGGCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCG                                                                                           >  4:140926/1‑148
                                                                                CAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGCGATGGCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTG                                                                            >  2:288464/1‑148
                                                                                                   AGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGCGATGGCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCA                                                         <  3:140926/148‑1
                                                                                                                GCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGCGATGGCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGG                                            <  1:288464/148‑1
                                                                                                                                                  AGGCGATGGCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACA          <  1:170428/148‑1
                                                                                                                                                  AGGCGATGGCCCTGGGAATGATGCACGTCCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGATGCAACGCTTGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCTCCGACA          <  8:99245/148‑1
                                                                                                                                                    GCGATGGCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACAC         >  4:101291/1‑147
                                                                                                                                                    GCGATGGCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACAC         >  8:239531/1‑147
                                                                                                                                                     CGATGGCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACACGA       <  3:191737/148‑1
                                                                                                                                                          GCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACACGAACTGT  <  4:310215/148‑1
                                                                                                                                                          GCCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACACGAACTGT  <  1:69318/148‑1
                                                                                                                                                           CCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACACGAACTGT  <  5:18730/147‑1
                                                                                                                                                           CCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACACGAACTGT  <  5:161769/147‑1
                                                                                                                                                                                                                                                                                                              
TCCTTCTGCACCAGAAATAGGACTTTCATTGCTTTCCTTGGGCGCTCTGCGCCTTCGCGGTCAACCATGGGGCGTGCTTACAGCTCACGCCGCCAGAACAGTTCGTGTCGGCGCACGGCCTTGCGGAAGAATTCGTTCTCCCCATAAGGCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5622257‑5622412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcgatggcCCTGGGCATGATGCACGACCTGCAGCCGCCGGCACCGTTCAAGCGCCGCCTGCGCCGCCTGCTGCAACGCTGGCTTGCCGGGCGACAGCCATCGCCTTATGGGGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACACGAACTGT  <  NC_002947/5622499‑5622354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.