New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	0 (0.000)	9 (0.170)	3/258	5.6	35.3%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	33 (0.630)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
Rejected: Coverage evenness skew score above cutoff.

GTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGG  >  NC_002947/5988624‑5988908                                                                                                                                               |                                                                                                                                                gTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGGTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCTTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCt                                                                                                                                           <  1:202705/148‑1 (MQ=255)    agtaCCGGGCCAAGGTGATGCAGACGGCCAAGGCGGCGCGGGTGGAGCCGGAGCGGGTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTcg                                                                                                                                        <  3:203942/145‑1 (MQ=255)       aCCGGGCCAATGTGATGGAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGGGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTcgcg                                                                                                                                      <  8:267374/147‑1 (MQ=255)       aCCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTcgcg                                                                                                                                      <  2:38964/147‑1 (MQ=255)       aCCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTcgcg                                                                                                                                      <  7:180169/147‑1 (MQ=255)         cGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCACGCGCGGCGCTTCGCggg                                                                                                                                    >  2:111269/1‑147 (MQ=255)            gCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGCGCGGGAGCGGGTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGAATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTaa                                                                                                                                 <  1:206053/148‑1 (MQ=255)                  gTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCt                                                                                                                          <  4:146578/148‑1 (MQ=255)                      tGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTa                                                                                                                      >  2:180698/1‑148 (MQ=255)                       gCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTAc                                                                                                                     >  1:123217/1‑148 (MQ=255)                         aGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTAc                                                                                                                     <  6:51186/146‑1 (MQ=255)                           aCGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgttt                                                                                                                 <  4:291353/148‑1 (MQ=255)                                              tggagctggagcGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTcc                                                                                              >  8:214881/1‑148 (MQ=255)                                                gagcgggagcggTTGTTTGATTCGGATGCGGACTGCGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCtg                                                                                            <  4:293150/148‑1 (MQ=255)                                                          ggTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCtgt                                                                                           >  6:170200/1‑139 (MQ=255)                                                          ggTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCtgt                                                                                           <  5:170200/139‑1 (MQ=255)                                                            ttgttTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTAtt                                                                                                <  7:66013/132‑1 (MQ=255)                                                            ttgttTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTAtt                                                                                                >  8:66013/1‑132 (MQ=255)                                                            ttgttTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCa                                                                                 >  5:255935/1‑147 (MQ=255)                                                                                    ggCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGcc                                                           <  6:255935/145‑1 (MQ=255)                                                                                     gCCTTTGGGCGCGTGCCTTGCGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGGGGCGCTTCGCGGGCAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGa                                                       <  7:236049/148‑1 (MQ=255)                                                                                          ttGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGatat                                                    <  1:180698/146‑1 (MQ=255)                                                                                             gcgcGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGcgt                                               <  2:123217/148‑1 (MQ=255)                                                                                                     cTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTacaa                                        <  5:300742/147‑1 (MQ=255)                                                                                                       tGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAAACCGCTCCTACGTTTGTTTCTGGCCAGTTATTGCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATAGCGTCGTacaaa                                       >  5:263051/1‑146 (MQ=255)                                                                                                        gAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGatat                                                    <  8:179279/132‑1 (MQ=255)                                                                                                        gAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGatat                                                    >  7:179279/1‑132 (MQ=255)                                                                                                            gTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGat                                                      >  3:131926/1‑126 (MQ=255)                                                                                                            gTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGat                                                      <  4:131926/126‑1 (MQ=255)                                                                                                                     ccTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGccccc                                                                      >  2:236045/1‑101 (MQ=255)                                                                                                                     ccTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGccccc                                                                      <  1:236045/101‑1 (MQ=255)                                                                                                                      cTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcgcgcgcg                      >  2:22378/1‑148 (MQ=255)                                                                                                                           ag‑aTTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTgg                 >  4:67584/1‑148 (MQ=255)                                                                                                                                   gcgcCGCCCGCGCGGCGCTGCGCTGGTAAACCCGCTCCTACGTTTGTTTGGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACagga          <  4:135090/148‑1 (MQ=255)                                                                                                                                           cgcgcgGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTgg  <  3:67584/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                GTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAG‑ATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGG  >  NC_002947/5988624‑5988908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.