Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947196,3060TC22.1% 251.9 / 63.8 122N604N (AAT→AAC) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base T (42/53);  new base C (12/15);  total (54/68)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 122 total aligned reads displayed.

GCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATC  >  NC_002947/196161‑196447
                                                                                                                                                  |                                                                                                                                             
gCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATcc                                                                                                                                             <  4:29702/148‑1 (MQ=39)
 cGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCt                                                                                                                                            <  2:181974/148‑1 (MQ=39)
 cGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCt                                                                                                                                            <  1:317243/148‑1 (MQ=39)
  ggTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTg                                                                                                                                           >  8:192068/1‑148 (MQ=39)
   gTAATTTCGAGCAACTGACCCCGAACCCGACGCCGTCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCGCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGc                                                                                                                                          <  8:288264/148‑1 (MQ=255)
    tAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGc                                                                                                                                          <  5:23542/147‑1 (MQ=39)
         tCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGGAATCGGTGGACACAACTACCGCGACCATGACGGCGAGCCCTTCGGACACCGAAGGCGGCGTGATCAATTACACCTTGACCATGAGCAATCCTGccacga                                                                                                                                     >  1:77003/1‑144 (MQ=14)
          cGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCA‑TATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACg                                                                                                                                   <  3:306554/147‑1 (MQ=255)
           gAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGc                                                                                                                                  <  2:271527/148‑1 (MQ=39)
             gCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc                                                                                                                                 <  6:270682/147‑1 (MQ=38)
                aCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg                                                                                                                               >  6:74541/1‑146 (MQ=35)
                 cTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTg                                                                                                                             <  5:144189/147‑1 (MQ=35)
                 cTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTg                                                                                                                             <  6:81167/147‑1 (MQ=35)
                   gACCCCGAACCCGACGCCGGCTCAGACCACGATCAAG‑GACTCGGTCGACACCACTAACGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGAc                                                                                                                           <  5:252459/147‑1 (MQ=255)
                    aCCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGAc                                                                                                                           <  2:112888/146‑1 (MQ=37)
                    aCCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGAc                                                                                                                           <  8:114953/146‑1 (MQ=37)
                     ccccGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAg                                                                                                                         >  6:179689/1‑147 (MQ=38)
                     ccccGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt                                                                                                                        >  8:101247/1‑148 (MQ=39)
                     ccccGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt                                                                                                                        >  7:174297/1‑148 (MQ=39)
                       ccGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAgaga                                                                                                                      >  3:16985/1‑148 (MQ=255)
                        cGAACCCGACGCCGGCTCAGACCCCGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAGCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc                                                                                                                     <  8:104191/148‑1 (MQ=255)
                        cGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCTAGCCCGTCGGTCACCGAAGGCGGAGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGTTGACAGTGAc                                                                                                                     <  7:151283/148‑1 (MQ=255)
                        cGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc                                                                                                                     >  8:270003/1‑148 (MQ=39)
                        cGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc                                                                                                                     <  2:139457/148‑1 (MQ=39)
                         gAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAg                                                                                                                                      >  2:313493/1‑130 (MQ=35)
                         gAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAg                                                                                                                                      <  1:313493/130‑1 (MQ=35)
                            cccGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAccc                                                                                                                   >  2:315485/1‑146 (MQ=39)
                            cccGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAccc                                                                                                                   <  1:315485/146‑1 (MQ=39)
                             ccgccgccgGCGCAGACCACCATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGCCGAGCCCGTCGGTCACCGAAGGCGGCGTCATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt                                                                                                                <  1:228609/148‑1 (MQ=14)
                              cGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc                                                                                                               >  1:147811/1‑148 (MQ=39)
                                aCGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTg                                                                                                                 >  3:240254/1‑144 (MQ=39)
                                aCGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc                                                                                                               >  6:290161/1‑146 (MQ=39)
                                     ggCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACgg                                                                                                         >  6:48649/1‑147 (MQ=39)
                                          aGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa                                                                                                    <  8:38120/147‑1 (MQ=39)
                                           gACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAcc                                                                                                  <  7:270003/148‑1 (MQ=39)
                                           gACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAc                                                                                                   >  4:39362/1‑147 (MQ=39)
                                             ccACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt                                                                                                <  8:174297/148‑1 (MQ=39)
                                              cACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt                                                                                                >  8:199779/1‑147 (MQ=39)
                                               aCGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt                                                                                               <  5:24959/147‑1 (MQ=39)
                                                     aaC‑GACTCGGTCGACACCACTACCGCGAGCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg                                                                                        <  8:184890/148‑1 (MQ=255)
                                                      aC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa                                                                                       <  2:140232/148‑1 (MQ=39)
                                                       c‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                         >  5:238580/1‑145 (MQ=39)
                                                            tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCACACCATTTCCGTTGACGCCg                                                                                  >  4:220632/1‑148 (MQ=255)
                                                            tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg                                                                                  >  7:140564/1‑148 (MQ=39)
                                                               gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                 <  5:74541/146‑1 (MQ=39)
                                                               gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                 <  5:179689/146‑1 (MQ=39)
                                                                tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCa                                                                               >  3:318138/1‑147 (MQ=39)
                                                                 cGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                 >  6:214345/1‑144 (MQ=38)
                                                                      ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc                                                                          >  4:284477/1‑146 (MQ=17)
                                                                        accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCaaa                                                                             >  8:189601/4‑141 (MQ=0)
                                                                        accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAGCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCACCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg                                                                      <  7:177184/145‑1 (MQ=1)
                                                                        acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGCCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTGGAAGCCGGCAAACCCCAg                                                                       >  6:195771/1‑147 (MQ=255)
                                                                        acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                      >  2:46610/1‑148 (MQ=17)
                                                                        acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                      <  4:91284/148‑1 (MQ=37)
                                                                        acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACCCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                      >  2:18187/1‑148 (MQ=17)
                                                                         ccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                     >  1:275975/3‑148 (MQ=2)
                                                                          tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                      >  6:24325/1‑146 (MQ=11)
                                                                          tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                      >  6:110920/1‑146 (MQ=35)
                                                                             cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGc                                                                    <  6:211766/145‑1 (MQ=34)
                                                                             cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAg                                                                  <  5:48649/147‑1 (MQ=34)
                                                                             cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc                                                                 >  4:306361/1‑148 (MQ=34)
                                                                             cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc                                                                 >  1:239453/1‑148 (MQ=12)
                                                                                   ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa                                                            <  6:270028/147‑1 (MQ=34)
                                                                                    cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGact                                                          >  2:309107/1‑146 (MQ=12)
                                                                                      gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt                                                          >  6:128965/1‑146 (MQ=34)
                                                                                       aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc                                                        >  4:259005/1‑147 (MQ=34)
                                                                                       aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc                                                       <  2:275975/148‑1 (MQ=255)
                                                                                       aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc                                                        <  4:64857/147‑1 (MQ=255)
                                                                                        cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt                                                         <  5:263887/145‑1 (MQ=34)
                                                                                        cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt                                                         <  6:256603/145‑1 (MQ=255)
                                                                                        cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa                                                      <  7:226850/148‑1 (MQ=255)
                                                                                               cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg                                               <  2:79036/148‑1 (MQ=255)
                                                                                                ccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg                                               <  6:40748/147‑1 (MQ=255)
                                                                                                       tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa                                       >  1:124385/1‑148 (MQ=34)
                                                                                                       tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGa                                       <  2:239453/148‑1 (MQ=255)
                                                                                                       tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAAAGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCAGGCGAATGa                                       >  7:62036/1‑148 (MQ=11)
                                                                                                       tCACCGAAGGCGGCGTGATCACTTACACCGTAACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGa                                       <  7:26054/148‑1 (MQ=11)
                                                                                                        cACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa                                       <  5:128965/147‑1 (MQ=34)
                                                                                                          ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAccc                                                                                                                   >  1:271364/1‑69 (MQ=35)
                                                                                                           cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc                                   <  3:306361/148‑1 (MQ=34)
                                                                                                           cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc                                   <  2:124385/148‑1 (MQ=34)
                                                                                                            gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa                                                                                       <  4:263421/95‑1 (MQ=33)
                                                                                                              aGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa                                 <  5:214067/147‑1 (MQ=255)
                                                                                                                  ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTacaaca                            <  3:112132/148‑1 (MQ=255)
                                                                                                                   gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAACACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa                                 >  5:330871/1‑142 (MQ=17)
                                                                                                                   gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCAGGCAATACCCATGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa                                 <  6:330871/142‑1 (MQ=12)
                                                                                                                    cgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac                          >  7:294644/1‑148 (MQ=34)
                                                                                                                         tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACAGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt                       <  5:322209/146‑1 (MQ=21)
                                                                                                                           aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                   <  8:140564/148‑1 (MQ=34)
                                                                                                                            cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg                    <  5:140748/146‑1 (MQ=33)
                                                                                                                             ctACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc                                      <  5:135340/126‑1 (MQ=11)
                                                                                                                             ctACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc                                      >  6:135340/2‑127 (MQ=11)
                                                                                                                              tACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg                >  2:287220/1‑148 (MQ=255)
                                                                                                                                cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt                                    >  2:56940/1‑126 (MQ=255)
                                                                                                                                  ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg            <  8:294644/148‑1 (MQ=34)
                                                                                                                                    gTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg          >  2:293946/1‑146 (MQ=255)
                                                                                                                                        cccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa       <  1:70785/147‑1 (MQ=11)
                                                                                                                                         ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCTAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAcc     <  1:125525/148‑1 (MQ=37)
                                                                                                                                             aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt   <  4:318138/146‑1 (MQ=37)
                                                                                                                                             aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc  <  3:39362/147‑1 (MQ=37)
                                                                                                                                                  |                                                                                                                                             
GCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAAC‑GACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATC  >  NC_002947/196161‑196447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑