Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947196,3510CG33.3% 147.6 / 102.1 103T619T (ACC→ACG) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (36/32);  new base G (16/18);  total (53/50)
Fisher's exact test for biased strand distribution p-value = 6.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 104 total aligned reads displayed.

GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAT  >  NC_002947/196204‑196489
                                                                                                                                                    |                                                                                                                                          
gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAcc                                                                                                                                            <  7:270003/148‑1 (MQ=39)
  ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt                                                                                                                                          <  8:174297/148‑1 (MQ=39)
   cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt                                                                                                                                          >  8:199779/1‑147 (MQ=39)
    aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt                                                                                                                                         <  5:24959/147‑1 (MQ=39)
       aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCTGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGGCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc                                                                                                                                      >  1:242703/1‑148 (MQ=255)
          aaCGACTCGGTCGACACCACTACCGCGAGCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg                                                                                                                                  <  8:184890/148‑1 (MQ=255)
           aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa                                                                                                                                 <  2:140232/148‑1 (MQ=39)
            cGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                                   >  5:238580/1‑145 (MQ=39)
                tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCACACCATTTCCGTTGACGCCg                                                                                                                            >  4:220632/1‑148 (MQ=255)
                tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg                                                                                                                            >  7:140564/1‑148 (MQ=39)
                   gTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                                           <  5:74541/146‑1 (MQ=39)
                   gTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                                           <  5:179689/146‑1 (MQ=39)
                    tCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCa                                                                                                                         >  3:318138/1‑147 (MQ=39)
                     cGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                                           >  6:214345/1‑144 (MQ=38)
                          ccacTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc                                                                                                                    >  4:284477/1‑146 (MQ=17)
                            accaCCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCaaa                                                                                                                       <  7:189601/138‑1 (MQ=0)
                            accaCCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCaaa                                                                                                                       >  8:189601/4‑141 (MQ=0)
                            accaCCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGAGCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCACCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                <  7:177184/145‑1 (MQ=1)
                            acTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGCCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTGGAAGCCGGCAAACCCCAg                                                                                                                 >  6:195771/1‑147 (MQ=255)
                            acTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                                                >  2:46610/1‑148 (MQ=17)
                            acTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                <  4:91284/148‑1 (MQ=37)
                            acTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACCCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                                                >  2:18187/1‑148 (MQ=17)
                             ccaCCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                               >  1:275975/3‑148 (MQ=2)
                             ccaCCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                               >  8:226850/3‑148 (MQ=2)
                             ccaCCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                               >  8:140940/3‑148 (MQ=2)
                              tACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                                                >  6:24325/1‑146 (MQ=11)
                              tACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                >  6:110920/1‑146 (MQ=35)
                                 cgcgACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGc                                                                                                              <  6:211766/145‑1 (MQ=34)
                                 cgcgACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAg                                                                                                            <  5:48649/147‑1 (MQ=34)
                                 cgcgACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc                                                                                                           >  4:306361/1‑148 (MQ=34)
                                 cgcgACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAACGTTGAAGCCGGCAAAACCCAGGGCAg                                                                                                            >  6:140748/1‑147 (MQ=21)
                                 cgcgACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc                                                                                                           >  1:239453/1‑148 (MQ=12)
                                       ccTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa                                                                                                      <  6:270028/147‑1 (MQ=34)
                                        cTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGact                                                                                                    >  2:309107/1‑146 (MQ=12)
                                        cTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGac                                                                                                     >  6:299386/1‑146 (MQ=12)
                                          gACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt                                                                                                    >  6:128965/1‑146 (MQ=34)
                                           aCGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc                                                                                                  >  4:259005/1‑147 (MQ=34)
                                           aCGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc                                                                                                 <  2:275975/148‑1 (MQ=255)
                                           aCGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc                                                                                                  <  4:64857/147‑1 (MQ=255)
                                            cGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt                                                                                                   <  5:263887/145‑1 (MQ=34)
                                            cGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt                                                                                                   <  6:256603/145‑1 (MQ=255)
                                            cGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa                                                                                                <  7:226850/148‑1 (MQ=255)
                                                   ccc‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg                                                                                         <  2:79036/148‑1 (MQ=255)
                                                    cc‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg                                                                                         <  6:40748/147‑1 (MQ=255)
                                                           gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa                                                                                    <  5:110920/146‑1 (MQ=34)
                                                            tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAGCCTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGa                                                                                 >  7:127938/1‑148 (MQ=255)
                                                            tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa                                                                                 >  1:124385/1‑148 (MQ=34)
                                                            tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGa                                                                                 <  2:239453/148‑1 (MQ=255)
                                                            tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAAAGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCAGGCGAATGa                                                                                 >  7:62036/1‑148 (MQ=11)
                                                            tCACCGAAGGCGGCGTGATCACTTACACCGTAACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGa                                                                                 <  7:26054/148‑1 (MQ=11)
                                                             cACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa                                                                                 <  5:128965/147‑1 (MQ=34)
                                                                cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc                                                                             <  3:306361/148‑1 (MQ=34)
                                                                cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc                                                                             <  2:124385/148‑1 (MQ=34)
                                                                 gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa                                                                                                                                 <  4:263421/95‑1 (MQ=33)
                                                                 gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa                                                                                                                                 >  3:263421/1‑95 (MQ=33)
                                                                   aGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa                                                                           <  5:214067/147‑1 (MQ=255)
                                                                       ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTacaaca                                                                      <  3:112132/148‑1 (MQ=255)
                                                                        gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAACACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa                                                                           >  5:330871/1‑142 (MQ=17)
                                                                        gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCAGGCAATACCCATGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa                                                                           <  6:330871/142‑1 (MQ=12)
                                                                         cgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac                                                                    >  7:294644/1‑148 (MQ=34)
                                                                              tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACAGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt                                                                 <  5:322209/146‑1 (MQ=21)
                                                                                aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                             <  8:140564/148‑1 (MQ=34)
                                                                                 cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg                                                              <  5:140748/146‑1 (MQ=33)
                                                                                  ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCAAACGGCCAAACAATTACCGATGAAGCCGGCAAAACCCAGGGCAGCGTCGAATTCAAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                            >  5:64407/1‑147 (MQ=11)
                                                                                  ctACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc                                                                                >  6:135340/2‑127 (MQ=11)
                                                                                   tACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg                                                          >  2:287220/1‑148 (MQ=255)
                                                                                     cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt                                                                              >  2:56940/1‑126 (MQ=255)
                                                                                     cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt                                                                              <  1:56940/126‑1 (MQ=255)
                                                                                       ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                                                      <  8:294644/148‑1 (MQ=34)
                                                                                         gTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg                                                    >  2:293946/1‑146 (MQ=255)
                                                                                             cccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa                                                 <  1:70785/147‑1 (MQ=11)
                                                                                              ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCTAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAcc                                               <  1:125525/148‑1 (MQ=37)
                                                                                                tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt                                             >  2:137942/1‑148 (MQ=37)
                                                                                                  aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt                                             <  4:318138/146‑1 (MQ=37)
                                                                                                  aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc                                            <  3:39362/147‑1 (MQ=37)
                                                                                                        ccTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                               <  8:305998/74‑1 (MQ=11)
                                                                                                        ccTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                               >  7:305998/1‑74 (MQ=11)
                                                                                                        ccTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt                                                                <  1:77955/121‑1 (MQ=12)
                                                                                                             ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCAcc                                >  8:42540/1‑148 (MQ=38)
                                                                                                              cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcg                               <  3:259005/148‑1 (MQ=38)
                                                                                                                gACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGAGTCGACTTCCAGACAACGGCGAATGACGTCTACAACAACGGTTc                                                               >  2:55949/1‑114 (MQ=11)
                                                                                                                 aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg                            >  8:1734/1‑148 (MQ=39)
                                                                                                                  cGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg                            >  5:293450/1‑147 (MQ=39)
                                                                                                                    ccGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa                                                 >  6:253044/1‑124 (MQ=38)
                                                                                                                    ccGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa                                                 <  5:253044/124‑1 (MQ=38)
                                                                                                                      ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAAt                       >  2:295009/1‑148 (MQ=39)
                                                                                                                          cccgTGAACCTGACCAACGGCCAACCGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCAGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCg                   <  4:237083/145‑1 (MQ=11)
                                                                                                                           cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt                                             >  3:123462/1‑121 (MQ=37)
                                                                                                                           cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt                                             <  4:123462/121‑1 (MQ=37)
                                                                                                                           cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc                    >  7:223508/1‑146 (MQ=38)
                                                                                                                             gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg                                                                                         >  1:110877/1‑75 (MQ=34)
                                                                                                                             gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTaca                                                                         >  2:195301/1‑91 (MQ=33)
                                                                                                                             gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTaca                                                                         <  1:195301/91‑1 (MQ=33)
                                                                                                                               gACCCTGTCCAACGGCCAAAACATAACAGTTGAAGCCGGCAAAACCCAGGGCAGc                                                                                                           >  4:2600/1‑55 (MQ=11)
                                                                                                                                 cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                            <  4:119169/100‑1 (MQ=33)
                                                                                                                                 cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                            >  3:119169/1‑100 (MQ=33)
                                                                                                                                   cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa                                                 >  4:12466/1‑109 (MQ=35)
                                                                                                                                   cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa                                                 <  3:12466/109‑1 (MQ=35)
                                                                                                                                       ccAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAccc       <  6:108585/147‑1 (MQ=17)
                                                                                                                                          aCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGAGTCGATTTCCAGCCCCCGGCGAATGACGTCTACAACAAAGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAAATTCGAGCAACTGCCCCCGa    >  2:198460/1‑147 (MQ=11)
                                                                                                                                                    |                                                                                                                                          
GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAT  >  NC_002947/196204‑196489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑