Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,419,549	+C	intergenic (‑38/+98)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,419,548	1	.	C	100.0%	141.2 / NA	42	intergenic (‑37/+99)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (19/23);  total (19/23)

CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGA‑CCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGAC  >  NC_002947/1419401‑1419683                                                                                                                                                      |                                                                                                                                         cTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGggctgg‑c                                                                                                                                         >  6:321453/1‑149 (MQ=255)  tGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGggctgg‑cc                                                                                                                                        >  4:121255/1‑148 (MQ=255)       ggggATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTc                                                                                                                                    <  1:175715/149‑1 (MQ=255)       ggggATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTc                                                                                                                                    <  3:121255/149‑1 (MQ=255)             gCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTGGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCggg                                                                                                                               >  1:357345/1‑148 (MQ=255)                      gATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCt                                                                                                                     >  1:18687/1‑149 (MQ=255)                       aTGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTc                                                                                                                    >  8:184682/1‑149 (MQ=255)                          cGGCACAGGGGGTGAGTGGTTGTTTCGCCTTGGTAGCATCAGGGCTTGCCGCATGTTGTGGGTTCTGGTGTGGTGTCGGGGGGCATTGTTTTGTTTCCCTGGAATCGGGGTTGCCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTcc                                                                                                                   <  1:53521/148‑1 (MQ=255)                             aaCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                              <  1:217683/149‑1 (MQ=255)                             aaCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                              <  5:321453/149‑1 (MQ=255)                             aaCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCAGCTCCCACAg                                                                                                              >  3:87012/1‑149 (MQ=255)                                   gggTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACTCACGCTCCCACAgtacctg                                                                                                        >  7:173356/1‑143 (MQ=255)                                     gTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACtgtg                                                                                                      <  7:184682/149‑1 (MQ=255)                                     gTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCACTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACtgtg                                                                                                      >  5:309787/1‑149 (MQ=255)                                          tgttgtTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTGGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGt                                                                                                  <  2:357345/148‑1 (MQ=255)                                           gttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGc                                                                                                >  8:325539/1‑149 (MQ=255)                                               ttttCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGa                                                                                            <  7:325539/149‑1 (MQ=255)                                                 ttCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGAc                                                                                           <  2:18687/148‑1 (MQ=255)                                                 ttCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACg                                                                                          >  5:171779/1‑149 (MQ=255)                                                   cGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACgg                                                                                         <  6:261501/148‑1 (MQ=255)                                                      cTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgt                                                                                     >  1:87423/1‑149 (MQ=255)                                                         ggTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGGAGTGGGTGACGGCTgtggt                                                                                  >  7:165212/1‑149 (MQ=255)                                                          gTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                    <  3:212476/146‑1 (MQ=255)                                                          gTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCAACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                    >  4:212476/1‑146 (MQ=255)                                                            aGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGAc                                                                               >  6:239284/1‑149 (MQ=255)                                                               agctcgTCTTGCCGACTGTGGTGGGGTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCt                                                                            <  4:87012/144‑1 (MQ=255)                                                                 cAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgt                                                                          <  6:347750/149‑1 (MQ=255)                                                                    gTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGa                                                                                >  4:115582/1‑140 (MQ=255)                                                                    gTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGa                                                                                <  3:115582/140‑1 (MQ=255)                                                                     tCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCAACCACAGGTACTGTGCAGTGCGTGAACGCTTTGGTGAaccgttgg                                                                        >  7:129406/1‑142 (MQ=255)                                                                      cTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGGGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAg                                                                     <  7:216118/149‑1 (MQ=255)                                                                          ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCgg                                                                  <  4:92080/148‑1 (MQ=255)                                                                           cGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                <  5:239284/149‑1 (MQ=255)                                                                            gACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgt                                                                          >  7:307696/1‑138 (MQ=255)                                                                            gACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgt                                                                          <  8:307696/138‑1 (MQ=255)                                                                                           tgttgtgttgTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                <  3:132440/133‑1 (MQ=255)                                                                                           tgttgtgttgTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                >  4:132440/1‑133 (MQ=255)                                                                                               gtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGcc                                               <  4:279735/146‑1 (MQ=255)                                                                                               gtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCtag                                            >  3:279735/1‑147 (MQ=255)                                                                                                  ttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGa                                                      <  8:113786/136‑1 (MQ=255)                                                                                                                 gttttgtttCCCTGGATTCTGGGTTG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGGAGTGGGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGA‑CCTGCTAATGCAAGgtgt                         >  1:286047/1‑149 (MQ=255)                                                                                                                         tCCCTGTATTGTGGGTTG‑CCTGGGCTGGCCTCTGCGCGGGCCCGCCCGCTCCCACAGTTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGGGGGCGTGCCCGCGAAGAGGCCTGA‑CCTGCTAATGCAAGGTGTGAGGctc                  <  8:165212/148‑1 (MQ=255)                                                                                                                               gATTGTGGGTTG‑CCTGGGCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGGGACGGCTGTGGGGACCCTGTGGGAGGGGGCGTGCCCGCGAATAGGCCTGACCCTGCTAATGCAAGGTGTGAGGCTCTGTgg             <  1:27247/148‑1 (MQ=37)                                                                                                                                        ttG‑CCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGA‑CCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGAc  >  1:226348/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                         CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTG‑CCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGA‑CCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGAC  >  NC_002947/1419401‑1419683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑