New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808174 =	2 (0.030)	24 (0.520)	15/212	2.9	62.7%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	27 (0.580)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAA  >  NC_002947/4808028‑4808317                                                                                                                                                   |                                                                                                                                                ctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaccc                                                                                                                                               <  6:168389‑M1/3‑1 (MQ=255)   ataGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTAGACGGGAGAGGTTCAGAGCCTGGTAGATCGATCGccgccc                                                                                                                                               >  5:280502/1‑147 (MQ=38)   acgtttgtttcgggccagttattactgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgc                                                                                                                                             <  6:316773‑M1/5‑1 (MQ=255)    tcgtgCACTGGGAGGACTTCGCGCTTTGGCGCGTAGGGGTTGGGCGTGAGGGTTTCCGCGCCTGGGAGGGGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGccgcccgc                                                                                                                                             <  7:273647/144‑1 (MQ=37)      tttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgcg                                                                                                                                            <  7:214449‑M1/6‑1 (MQ=255)         gtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacacggcggtcgcgcgcgcctggcacaggagggattggccataaaaaaacgtaggagcgggtttaCCCGCGAAgc                                                                                                                                        >  6:71519‑M1/139‑148 (MQ=255)                gccagttattcctgtgggacgcgcacgagagccccctggcgcacgcctcgatatcgagtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgcg                                                                                                                                <  6:161582‑M1/18‑1 (MQ=255)                 ccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgg                                                                                                                               >  5:168389‑M1/131‑149 (MQ=255)                           ctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaccgtagggccgggtttaCCCGCGAGGCGCCGGccgggcggcgagcg                                                                                                                     <  2:22301‑M1/29‑5 (MQ=255)                                         gcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCt                                                                                                       <  1:344618‑M1/43‑1 (MQ=255)                                                cgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAAtc                                                                                                <  1:109905‑M1/50‑1 (MQ=255)                                                  ccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAAtcct                                                                                              <  5:89765‑M1/52‑1 (MQ=255)                                                      ggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCgg                                                                                          <  3:354358‑M1/56‑1 (MQ=255)                                                      ggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCgg                                                                                          <  6:259859‑M1/56‑1 (MQ=255)                                                         cacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCt                                                                                                                       >  1:168837‑M1/91‑117 (MQ=255)                                                         cacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCt                                                                                                                       <  2:168837‑M1/27‑1 (MQ=255)                                                                      tcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAAtt                                                                          >  4:354358‑M1/78‑149 (MQ=255)                                                                                caaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGt                                                                <  8:49665‑M1/82‑1 (MQ=255)                                                                                 aaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTc                                                               >  6:89765‑M1/67‑149 (MQ=255)                                                                                  aacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTc                                                               <  7:187841‑M1/83‑1 (MQ=255)                                                                                           gtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAAt                                                     >  5:150340‑M1/57‑149 (MQ=255)                                                                                           gtcgcgcgcgactggtgcaggagggactggccgaaaaaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGAGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCaaa                                                                             <  7:26902‑M1/69‑1 (MQ=255)                                                                                                gcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCATCCACTCAAAATTCCaa                                                >  5:259859‑M1/52‑149 (MQ=255)                                                                                                         gtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGcccc                                       <  7:179556‑M1/107‑1 (MQ=255)                                                                                                          tgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGccccc                                      <  5:215925‑M1/108‑1 (MQ=255)                                                                                                          acaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcggg                                                                                                                              >  8:239582‑M1/42‑61 (MQ=255)                                                                                                          acaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcggg                                                                                                                              <  7:239582‑M1/20‑1 (MQ=255)                                                                                                              gagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAgcg                                                                                                                                       <  6:18621‑M1/11‑1 (MQ=255)                                                                                                              gagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAgcg                                                                                                                                       >  5:18621‑M1/38‑48 (MQ=255)                                                                                                                       ggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAc                                               >  4:157285‑M1/29‑127 (MQ=255)                                                                                                                       ggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAc                                               <  3:157285‑M1/99‑1 (MQ=255)                                                                                                                         ccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCGACAAAATTCCAAcgc                       <  6:95761‑M1/123‑1 (MQ=255)                                                                                                                             aacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACgccgcc                   >  8:179556‑M1/23‑149 (MQ=255)                                                                                                                               caaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAACTTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTc                 >  6:215925‑M1/21‑149 (MQ=255)                                                                                                                                              gtttcCCCGCGAAGCGCGGCGAGGGCGGCGCTCGATCTCACAGGCGCTGAACATCCTGCTTCTAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa  >  8:187841‑M1/6‑149 (MQ=255)                                                                                                                                              gtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa  <  7:270446‑M1/144‑1 (MQ=255)                                                                                                                                              gtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCCCAAAATTCCAACGCCGCCTccc               >  7:227379‑M1/6‑136 (MQ=255)                                                                                                                                              gtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTACGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCCCAAAATTCCAACGCCGCCTccc               <  8:227379‑M1/131‑1 (MQ=255)                                                                                                                                              gtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCACCGGCAACCACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa  >  2:109905‑M1/6‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                GTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAA  >  NC_002947/4808028‑4808317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.