New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 65525	43 (0.830)	3 (0.060)	3/258	NT	5.6%	coding (583/1653 nt)	betA‑I	choline dehydrogenase
	?	NC_002947	= 65595	59 (1.170)					coding (653/1653 nt)	betA‑I	choline dehydrogenase

TTGGCAAGGTCGACGATTTCAACACCGGCGACAACCAGGGTTGTGGATATTTTCAGGTCAACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/65460‑65525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcACAGTGAGGTTGGCGCGATCCTTGATCGGCCGCAGGAAAGCTTTGGAAGCATTCCAGCGCACACCACTGCGCTGGTTGACCTGAAAATATCCACAACCCTGGTTGTCGCCGGTGTTGAAATCGTCGACCTTGCCAATACCGCTCTG  <  NC_002947/65595‑65450                                                                                                                                                                                                                      TTGGCAAGGTCGACGATTTCAACACCGGCGACAACCAGGGTTGTGGATATTTTCAGGTCAACCAGCACAGTGAGGTTGGCGCGATCCTTGATCGGCCGCAGGAAAGCTTTGGAAGCATTCCAGCGCACACCACTGCGCTGGTTGACCT                                                                  <  1:217313/148‑1   GGCAAGGTCGACGATTTCAACACCGGCGACAACCAGGGTTGTGGATATTTTCAGGTCAACCAGCACAGTGAGGTTGGCGCGATCCTTGATCGGCCGCAGGAAAGCTTTGGAAGCATTCCAGCGCACACCACTGCGC                                                                            >  5:302465/1‑136   GGCAAGGTCGACGATTTCAACACCGGCGACAACCAGGGTTGTGGATATTTTCAGGTCAACCAGCACAGTGAGGTTGGCGCGATCCTTGATCGGCCGCAGGAAAGCTTTGGAAGCATTCCAGCGCACACCACTGCGC                                                                            <  6:302465/136‑1                                                                AGCACAGTGAGGTTGGCGCGATCCTTGATCGGCCGCAGGAAAGCTTTGGAAGCATTCCAGCGCACACCACTGCGCTGGTTGACCTGAAAATATCCACAACCCTGGTTGTCGCCGGTGTTGAAATCGTCGACCTTGCCAATACCGCTCTG  <  1:249794/149‑1                                                                                                                                                                                                                      TTGGCAAGGTCGACGATTTCAACACCGGCGACAACCAGGGTTGTGGATATTTTCAGGTCAACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/65460‑65525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcACAGTGAGGTTGGCGCGATCCTTGATCGGCCGCAGGAAAGCTTTGGAAGCATTCCAGCGCACACCACTGCGCTGGTTGACCTGAAAATATCCACAACCCTGGTTGTCGCCGGTGTTGAAATCGTCGACCTTGCCAATACCGCTCTG  <  NC_002947/65595‑65450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.