New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	553529 =	77 (1.480)	4 (0.080)	3/256	NT	5.8%	coding (75/276 nt)	rpsS	30S ribosomal protein S19
	?	NC_002947	553568 =	57 (1.140)					coding (114/276 nt)	rpsS	30S ribosomal protein S19

CCGGCGAACTCGCCCAGTTTGTGGCCGACCATGTCTTCGTTCACGAGAACTGGAACATGCTGGCGACCGTTGTGAACCGCGATGGTCAGACCGACCATTTGTGGCAGGATCATCGAACGGCGCGACCAGGTTTTAACTGGCTTGCGATCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/553681‑553529 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcGATGATCCTGCCACAAATGGTCGGTCTGACCATCGCGGTTCACAACGGTCGCCAGCATGTTCCAGTTCTCGTGAACGAAGACATGGTCGGCCACAAACTGGGCGAGTTCGCCGGTACCCGCACCTATCGCGGGCACGTGGCTGACAA  >  NC_002947/553568‑553714                                                                                                                                                                                                                                                                                                              CCGGCGAACTCGCCCAGTTTGTGGCCGACCATGTCTTCGTTCACGAGAACTGGAACATGCTGGCGACCGTTGTGAACCGCGATGGTCAGACCGACCATTTGTGGCAGGATCATCGAACGGCGCGACCAGGTTTTAACTGGCTTGCGATC                                                                                                                                                         <  3:228729/149‑1  CGGCGAACTCGCCCAGTTTGTGGCCGACCATGTCTTCGTTCACGAGAACTGGAACATGCTGGCGACCGTTGTGAACCGCGATGGTCAGACCGACCATTTGTGGCAGGATCATCGAACGGCGCGACCAGGTTTTAACTGGCTTGCGATCG                                                                                                                                                        >  7:34100/1‑149    GCGAACTCGCCCAGTTTGTGGCCGACCATGTCTTCGTTCACGAGAACTGGAACATGCTGGCGACCGTTGTGAACCGCGATGGTCAGACCGACCATTTGTGGCAGGATCATCGAACGGCGCGCCCAGGTTTTAACTGGCTTGCGATCGTT                                                                                                                                                      >  1:303130/1‑149    GCGAACTCGCCCAGTTTGTGGCCGACCATGTCTTCGTTCACGAGAACTGGAACATGCTGGCGACCGTTGTGAACCGCGATGGTCAGACCGACCATTTGTGGCAGGATCATCGAACGGCGCGACCAGGTTTTAACTGGCTTGCGATCGT                                                                                                                                                       >  4:239045/1‑148                                                                                                             ATCATCGAACGGCGCGACCAGGTTTTAACTGGCTTGCGATCGTTCGATGATCCTGCCACAAATGGTCGGTCTGACCATCGCGGTTCACAACGGTCGCCAGCATGTTCCAGTTCTCGTGAACGAAGACATGGTCGGCCACAAACTGGGC                                              >  4:58030/1‑148                                                                                                             ATCATCGAACGGCGCGACCAGGTTTTAACTGGCTTGCGATCGTTCGATGATCCTGCCACAAATGGTCGGTCTGACCATCGCGGTTCACAACGGTCGCCAGCATGTTCCAGTTCTCGTGAACGAAGACAT                                                                 <  3:288079/129‑1                                                                                                             ATCATCGAACGGCGCGACCAGGTTTTAACTGGCTTGCGATCGTTCGATGATCCTGCCACAAATGGTCGGTCTGACCATCGCGGTTCACAACGGTCGCCAGCATGTTCCAGTTCTCGTGAACGAAGACAT                                                                 >  4:288079/1‑129                                                                                                                 TCGAACGGCGCGACCAGGTTTTAACTGGCTTGCGATCGTTCGATGATCCTGCCACAAATGGTCGGTCTGACCATCGCGGTTCACAACGGTCGCCAGCATGTTCCAGTTCTCGTGAACGAAGACATGGTCGGCCACAAACTGGGCGAGTT                                         >  8:22728/1‑149                                                                                                                                                     CGTTCGATGATCCTGCCACAAATGGTCGGTCTGACCATCGCGGTTCACAACGGTCGCCAGCATGTTCCAGTTCTCGTGAACGAAGACATGGTCGGCCACAAACTGGGCGAGTTCGCCGGTACCCGCACCTATCGCGGGCACGTGGCTGA     >  6:90961/1‑149                                                                                                                                                         CGATGCTCCTGCCACAAATGGTCGGTCTGACCATCGCGGTTCACAACGGTCGCCAGCATGTTCCAGTTCTCGTGAACGAAGACATGGTCGGCCACAAACTGGGCGAGTTCGCCGGTACCCGCACCTATCGCGGGCACGTGGCTGACAA  <  5:4352/148‑1                                                                                                                                                                                                                                                                                                              CCGGCGAACTCGCCCAGTTTGTGGCCGACCATGTCTTCGTTCACGAGAACTGGAACATGCTGGCGACCGTTGTGAACCGCGATGGTCAGACCGACCATTTGTGGCAGGATCATCGAACGGCGCGACCAGGTTTTAACTGGCTTGCGATCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/553681‑553529 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcGATGATCCTGCCACAAATGGTCGGTCTGACCATCGCGGTTCACAACGGTCGCCAGCATGTTCCAGTTCTCGTGAACGAAGACATGGTCGGCCACAAACTGGGCGAGTTCGCCGGTACCCGCACCTATCGCGGGCACGTGGCTGACAA  >  NC_002947/553568‑553714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.