| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 692389 = | 61 (1.170) | 3 (0.060) | 3/248 | NT | 5.3% | coding (726/744 nt) | PP_0594 | TetR family transcriptional regulator |
| ? | NC_002947 | 692466 = | 51 (1.050) | coding (649/744 nt) | PP_0594 | TetR family transcriptional regulator | |||||
CCCCGTACACCTGATCTTCCTGCTTTGGGGCAGCACCCAGCACTACGCTGACTTCGCCACCCAGATTTGCCAGGTGACTGGCCGCAGCCGCCTGACCAAGCAGGACATGGAAGACGCGAGCAACAACCTTATCCACATCATTCTGAAGGGCTGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/692545‑692389‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcggcCAGTCACCTGGCAAATCTGGGTGGCGAAGTCAGCGTAGTGCTGGGTGCTGCCCCAAAGCAGGAAGATCAGGTGTACGGGGTCGACCGGGTCCATCTTGCCTGCTTCGATCCAGGCCTGGAATACCGCAGCACGGCCGCGGAACCAT > NC_002947/692466‑692611 CCCCGTACACCTGATCTTCCTGCTTTGGGGCAGCACCCAGCACTACGCTGACTTCGCCACCCAGATTTGCCAGGTGACTGGCCGCAGCCGCCTGACCAAGCAGGACATGGAAGACGCGAGCAACAACCTTATCCACATCATTCTGAAGG > 5:130684/1‑149 CCCGTACACCTGATCTTCCTGCTTTGGGGCAGCACCCAGCACTACGCTGACTTCGCCACCCAGATTTGCCAGGTGACTGGCCGCAGCCGCCTGACCAAGCAGGACATGGAAGACGCGAGCAACAACCTTATCCACATCATTCTGAAGGG < 2:147911/149‑1 TACACCTGATCTTCCTGCTTTGGGGCAGCACCCAGCACTACGCTGACTTCGCCACCCAGATTTGCCAGGTGACTGGCCGCAGCCGCCTGACCAAGCAGGACATGGAAGACGCGAGCAACAACCTTATCCACATCATTCTGAAGGGCTGC < 7:138262/149‑1 CCGCAGCCGCCTGACCAAGCAGGACATGGAAGACGCGAGCAACAACCTTATCCACATCATTCTGAAGGGCTGCGGCCAGTCACCTGGCAAATCTGGGTGGCGAAGTCAGCGTAGTGCTGGGTGCTGCCCCAAAGCAGGAAGATCA < 1:238324/145‑1 CCGCAGCCGCCTGACCAAGCAGGACATGGAAGACGCGAGCAACAACCTTATCCACATCATTCTGAAGGGCTGCGGCCAGTCACCTGGCAAATCTGGGTGGCGAAGTCAGCGTAGTGCTGGGTGCTGCCCCAAAGCAGGAAGATCA > 2:238324/1‑145 CGCAGCCGCCTGACCAAGCAGGACATGGAAGACGCGAGCAACAACCTTATCCACATCATTCTGAAGGGCTGCGGCCAGTCACCTGGCAAATCTGGGTGGCGAAGTCAGCGTAGTGCTGGGTGCTGCCCCAAAGCAGGAAGATCAGGTG > 2:62660/1‑148 GGCCAGTCACCTGGCAAATCTGGGTGGCGAAGTCAGCGTAGTGCTGGGTGCTGCCCCAAAGCAGGAAGATCAGGTGTACGGGGTCGACCGGGTCCATCTTGCCTGCTTCGATCCAGGCCTGGAATACCGCAGCACGGCCGCGGAACCAT < 3:4803/149‑1 GGCCAGTCACCTGGCAAATCTGGGTGGCGAAGTCAGCGTAGTGCTGGGTGCTGCCCCAAAGCAGGAAGATCAGGTGTACGGGGTCGACCGGGTCCATCTTGCCTGCTTCGATCCAGGCCTGGAATACCGCAGCACGGCCGCGGAACCAT > 4:4803/1‑149 CCCCGTACACCTGATCTTCCTGCTTTGGGGCAGCACCCAGCACTACGCTGACTTCGCCACCCAGATTTGCCAGGTGACTGGCCGCAGCCGCCTGACCAAGCAGGACATGGAAGACGCGAGCAACAACCTTATCCACATCATTCTGAAGGGCTGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/692545‑692389‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcggcCAGTCACCTGGCAAATCTGGGTGGCGAAGTCAGCGTAGTGCTGGGTGCTGCCCCAAAGCAGGAAGATCAGGTGTACGGGGTCGACCGGGTCCATCTTGCCTGCTTCGATCCAGGCCTGGAATACCGCAGCACGGCCGCGGAACCAT > NC_002947/692466‑692611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |