New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 818297	57 (1.090)	4 (0.080)	4/252	NT	7.1%	coding (379/516 nt)	PP_0704	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	= 818339	51 (1.030)					coding (337/516 nt)	PP_0704	ECF family RNA polymerase sigma‑70 factor

CTGTGCGGGCGTACCATCAGGCATCGGCATAGCGCAACCGGTAGCAGGCGCCCAGGGCTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGAACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/818144‑818297 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaacgcCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTGGCCCAGCTAGACGGTTTGAGCATCGTGCAGGTTGCCCAACGTCTGGGGGTGTCCAGGGCCACCGTTGAGCGCGACCTGGCCAAAGCCCTGGGCG  <  NC_002947/818339‑818192                                                                                                                                                                                                                                                                                                                CTGTGCGGGCGTACCATCAGGCATCGGCATAGCGCAACCGGTAGCAGGCGCCCAGGGCTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAG                                                                                                                                                            >  5:88536/1‑148   GTGCGGGCGTACCATCAGGCATCGGCATAGCGCAACCGGTAGCAGGCGCCCAGGGCTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGAA                                                                                                                                                         >  5:155071/1‑149    TGCGGGCGTACCATCAGGCATCGGCATAGCGCAACCGGTAGCAGGCGCCCAGGGCTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGAA                                                                                                                                                         <  7:28020/148‑1    TGCGGGCGTACCATCAGGCATCGGCATAGCGCAACCGGTAGCAGGCGCCCAGGGCTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGA                                                                                                                                                          <  7:103139/147‑1       GGGCGTACCATCAGGCATCGGCATAGCGCAACCGGTAGCAGGCGCCCAGGGCTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGAACGC                                                                                                                                                      >  8:279294/1‑148               CATCAGGCATCGGCATAGCGCAACCGGTAGCAGGCGCCCAGGGCTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGAACGCCTCGACCGC                                                                                                                                             >  8:63118/1‑149                                                       GGGCTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGAACGCCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCC                                                                                                     <  7:63118/149‑1                                                          CTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGAACGCCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGC                                                                                                  <  2:318965/149‑1                                                             TGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGAACGCCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTG                                                                                                <  7:279294/148‑1                                                                                                                                                     GAACGCCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTGGCCCAGCTAGACGGTTTGGGCATCGTGCAGGTTGCCCAACGTCTGGGGGTGTCCAGGGCCACCGTTGAGCGCGACCTGGCCAAAGCCCT       >  7:258286/1‑149                                                                                                                                                     GAACGCCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTGGCCCAGCTAGACGGTTTGAGCATCGTGCAGGTTGCCCAACGTCTGGGGGTGTCCAGGGCCACCGTTGAGCGCGACCTGGCCAAAGCCC        <  8:148893/148‑1                                                                                                                                                      AACGCCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTGGCCCAGCTAGACGGTTTGAGCATCGTGCAGGTTGCCCAACGTCTGGGGGTGTCCAGGGCCACCGTTGAGCGCGACCTGGCCAAAGCCCTG      <  7:40143/149‑1                                                                                                                                                       ACGCCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTGGCCCAGCTAGACGGTTTGAGCATCGTGCAGGTTGCCCAACGTCTGGGGGTGTCCAGGGCCACCGTTGAGCGCGACCTGGCCAAAGCCCTGG     <  4:255882/149‑1                                                                                                                                                          CCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTGGCCCAGCTAGCCGGTTTGAGCATCGTGCAGGTTGCCCAACGTCTGGGGGTGTCCAGGGCCACCGTTGAGCGCGACCTGGCCAAAGCCCTGGGCG  >  5:6743/1‑149                                                                                                                                                                                                                                                                                                                CTGTGCGGGCGTACCATCAGGCATCGGCATAGCGCAACCGGTAGCAGGCGCCCAGGGCTTTGGCCAGGTCGCGCTCAACGGTGGCCCTGGACACCCCCAGACGTTGGGCAACCTGCACGATGCTCAAACCGTCTAGCTGGGCCAGCAGGAACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/818144‑818297 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaacgcCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTGGCCCAGCTAGACGGTTTGAGCATCGTGCAGGTTGCCCAACGTCTGGGGGTGTCCAGGGCCACCGTTGAGCGCGACCTGGCCAAAGCCCTGGGCG  <  NC_002947/818339‑818192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.