| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1042214 = | 53 (1.020) | 4 (0.080) | 4/252 | NT | 7.2% | coding (24/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase |
| ? | NC_002947 | 1042255 = | 53 (1.080) | coding (65/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase | |||||
TGACGCTGTCCATACGCAGCAGGCGCTGCAGGTCACCGCCCAGTACCGAGGAAATCAGTCGCTCTTCGACCAGGTGCACCGTGCCGACGATACCGAATGCGAAGGCCCCGGCCACCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1042368‑1042214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGACAGCGTCAGTGACTGGAGTCATCGGCCTCGTCCAGACCAGCT > NC_002947/1042255‑1042402 TGACGCTGTCCATACGCAGCAGGCGCTGCAGGTCACCGCCCAGTACCGAGGAAATCAGTCGCTCTTCGACCAGGTGCACCGTGCCGACGATACCGAATGCGAAGGCCCCGGCCACCAGCGCGCTCATCAGGGCAAAGGCGATGATGATG > 6:169586/1‑149 GCTGTCCATACGCAGCAGGCGCTGCAGGTCACCGCCCAGTACCGAGGAAATCAGTCGCTCTTCGACCAGGTGCACCGTGCCGACGATACCGAATGCGAAGGCCCCGGCCACCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCT < 1:263193/149‑1 GCTGTCCATACGCAGCAGGCGCTGCAGGTCACCGCCCAGTACCGAGGAAATCAGTCGCTCTTCGACCAGGTGCACCGTGCCGACGATACCGAATGCGAAGGCCCCGGCCACCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCT < 2:273841/149‑1 TGTCCATACGCAGCAGGCGCTGCAGGTCACCGCCCAGTACCGAGGAAATCAGTCGCTCTTCGACCAGGTGCACCGTGCCGACGATACCGAATGCGAAGGCCCCGGCCACCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGG < 5:274674/149‑1 CCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGA > 6:18327/1‑147 GCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGT < 5:199637/108‑1 GCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGT > 6:199637/1‑108 GATGATGATGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGACAGCGTCAGTGACTGGAGTCATCGGCC < 5:18327/149‑1 CGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGGCGGCACGGTGCACCTGGTTGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGACAGCGTCAGTGACTGGAGTCATCGGCCTCGTCCAGAC < 7:289364/149‑1 TGGTGGCCGGGGCCTTCACATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGACAGCGTCAGTGACTGGAGTCATCGGCCTCGTCCAGACCAG > 3:147421/1‑149 GTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGCTACTGGCCGGTGACCTGCAGCGCCTGCTGCGTATGGACAGCGTCAGTGACTGGAGTCATCGGCCTAGTCCAGACCAGgt > 6:99094/1‑147 TGACGCTGTCCATACGCAGCAGGCGCTGCAGGTCACCGCCCAGTACCGAGGAAATCAGTCGCTCTTCGACCAGGTGCACCGTGCCGACGATACCGAATGCGAAGGCCCCGGCCACCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1042368‑1042214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGACAGCGTCAGTGACTGGAGTCATCGGCCTCGTCCAGACCAGCT > NC_002947/1042255‑1042402 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |