| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1095385 = | 57 (1.090) | 4 (0.080) | 4/252 | NT | 6.3% | coding (676/1494 nt) | rpoN | RNA polymerase sigma‑54 factor |
| ? | NC_002947 | 1095440 = | 66 (1.340) | coding (621/1494 nt) | rpoN | RNA polymerase sigma‑54 factor | |||||
AGACACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1095539‑1095385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccagcCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGGTCGAAACCGGCGCAGATTTCTTCGAGTGTGTCTTCCAGGTAGCCCTGGCCGTTGATGCTGTCGATCAGGGTCACGGCAATC > NC_002947/1095440‑1095587 AGACACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGTGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGC < 6:215125/149‑1AGACACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGC < 2:123819/149‑1AGACACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGC < 6:298850/149‑1AGACACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGC < 2:70802/149‑1 ACACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGCTGCTGCAACTGCGC < 7:275208/149‑1 CACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACGTCGGCGAATGCCTGTTGCTGCAACTGCGC < 8:257479/148‑1 ACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGCGCCA > 4:10315/1‑149 ACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGCGC > 2:193161/1‑147 ACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGCACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGCGCCA < 1:116633/149‑1 ACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGCGCCAGC > 8:204137/1‑149 CGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGCGCCAGCCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGG < 7:263521/124‑1 CGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGCGCCAGCCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGG > 8:263521/1‑124 GCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGCGCCAGCCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGGTCGAAACCGGCGCAGATTTCTTCGAGT > 3:261399/1‑149 CAACTGCGCCAGCCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGGTCGAAACCGGCGCAGATTTCTTCGAGTGTGTCTTCCAGGTAGCCCTGGCCGTTGATGCTGTCGATCAGG < 4:261399/149‑1 GCCAGCCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGGTCGAAACCGGCGCAGATTTCTTCGAGTGTGTCTTCCAGGTAGCCCTGGCCGTTGATGCTGTCGATCAGGGTCACGG < 5:266998/149‑1 GCCAGCCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGGTCGAAACCGGCGCAGATTTCTTCGAGTGTGTCTTCCAGGTAGCCCTGGCCGTTGATGCTGTCGATCAGGGTCACGG < 7:27888/149‑1 GCCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGGTCGAAACCGGCGCAGATTTCTTCGAGTGTGTCTTCCAGGTAGCCCTGGCCGTTGATGCTGTCGATCAGGGTCACGGCAAT < 7:6176/149‑1 CCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGGTCGAAACCGGCGCAGATTTCTTCGAGTGTGTCTTCCAGGTAGCCCTGGCCGTTGATGCTGTCGATCAGGGTCACGGCAATC < 4:243379/149‑1 AGACACACTCGAAGAAATCTGCGCCGGTTTCGACCCGGAGCTGGATATCGAACTGGACGAGGTCGAAGCGGTACTGCACCGCATCCAGCAGTTCGAGCCGGCTGGCGTTGGCGCCCGCAACCTCGGCGAATGCCTGTTGCTGCAACTGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1095539‑1095385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccagcCGGCTCGAACTGCTGGATGCGGTGCAGTACCGCTTCGACCTCGTCCAGTTCGATATCCAGCTCCGGGTCGAAACCGGCGCAGATTTCTTCGAGTGTGTCTTCCAGGTAGCCCTGGCCGTTGATGCTGTCGATCAGGGTCACGGCAATC > NC_002947/1095440‑1095587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |