New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1225841 =	60 (1.150)	4 (0.080)	4/254	NT	7.0%	coding (650/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein
	?	NC_002947	1225900 =	49 (0.990)					coding (591/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein

CATCCTCAAGGCGATGAACGCCGACAAGCAGATGAAGATGAACGTGATTTCCGCCAAGGACCACGGTGAAGCCTTCAACATGCTCGAAAGCGGCCGCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1225993‑1225841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCAGGTCCGGG  >  NC_002947/1225900‑1226047                                                                                                                                                                                                                                                                                                               CATCCTCAAGGCGATGAACGCCGACAAGCAGATGAAGATGAACGTGATTTCCGCCAAGGACCACGGTGAAGCCTTCAACATGCTCGAAAGCGGCCGCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGG                                                                                                                                                          >  4:15561/1‑149  ATCCTCAAGGCGATGAACGCCGACAAGCAGATGAAGATGAACGTGATTTCCGCCAAGGACCACGGTGAAGCCTTCAACATGCTCGAAAGCGGCCGCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGC                                                                                                                                                         <  5:168344/149‑1                                                                                              CCGCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTG                                                              >  7:240061/1‑148                                                                                              CCGCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTG                                                              <  8:240061/148‑1                                                                                                  GCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGAT                                                         >  3:190565/1‑149                                                                                                                           CCCTGCTCGCCGGTGAAATGGCCAAGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTG                                <  4:190565/149‑1                                                                                                                                                         GGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCAGGTCCGGG  <  3:4904/149‑1                                                                                                                                                                                                                                                                                                               CATCCTCAAGGCGATGAACGCCGACAAGCAGATGAAGATGAACGTGATTTCCGCCAAGGACCACGGTGAAGCCTTCAACATGCTCGAAAGCGGCCGCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1225993‑1225841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCAGGTCCGGG  >  NC_002947/1225900‑1226047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.