New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1618044 = | 53 (1.020) | 3 (0.060) | 3/258 | NT | 5.2% | coding (855/981 nt) | PP_1418 | tricarboxylate transport protein TctC |
? | NC_002947 | 1618084 = | 57 (1.130) | coding (815/981 nt) | PP_1418 | tricarboxylate transport protein TctC |
TGGAAGGCCTCGTTCGACAAGATGCTGGCCTCCGAGGACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1618085‑1618044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcCACCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGCGCACCACCGGCCAGACGATGTCGTAGCCCTGTTCCTTGGCAGTAGGGATGTCTTTCATTTCCGGCTCGTTCAGCCGGTTTTCAGAGAACACCGCGAG > NC_002947/1618084‑1618229 TGGAAGGCCTCGTTCGACAAGATGCTGGCCTCCGAGGACTTCCACCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGCGCACCACCGGCCAGACGATGTCGTAGCCCTGTTCCTTGGCAGTAGGGATGTCTTTCAT > 3:124861/1‑149 GGCCTCGTTCGACAAGATGCTGGCCTCCGAGGACTTCCGCCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGC < 7:260841/86‑1 GGCCTCGTTCGACAAGATGCTGGCCTCCGAGGACTTCCGCCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGC > 8:260841/1‑86 CTTCCACCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGTCGCGCACCACCGGCCAGACGATGTCGTAGCCCTGTTCCTTGGCAGTAGGGATGTCTTTCATTTCCGGCTCGTTCAGCCGGTTTTCAGAGAACACCGC > 1:240055/1‑147 TTCCACCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGCGCACCACCGGCCAGACGATGTCGTAGCCCTGTTCCTTGGCAGTAGGGATGTCTTTCATTTCCGGCTCGTTCAGCCGGTTTTCAGAGAACACCGCGAG > 6:26517/1‑149 TTCCACCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGCGCACCACCGGCCAGACGATGTCGTAGCCCTGTTCCTTGGCAGTAGGGATGTCTTTCATTTCCGGCTCGTTCAGCCGGTTTTCAGAGAA < 3:163735/140‑1 TTCCACCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGCGCACCACCGGCCAGACGATGTCGTAGCCCTGTTCCTTGGCAGTAGGGATGTCTTTCATTTCCGGCTCGTTCAGCCGGTTTTCAGAGAA > 4:163735/1‑140 TTCCACCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGCGCACCAC < 1:147321/59‑1 TTCCACCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGCGCACCAC > 2:147321/1‑59 TGGAAGGCCTCGTTCGACAAGATGCTGGCCTCCGAGGACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1618085‑1618044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcCACCAGGCGTAGTCCTCGTCGCTCACTTTTGGCCCCAGGTAGAAGCCGCGCACCACCGGCCAGACGATGTCGTAGCCCTGTTCCTTGGCAGTAGGGATGTCTTTCATTTCCGGCTCGTTCAGCCGGTTTTCAGAGAACACCGCGAG > NC_002947/1618084‑1618229 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |