| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1815303 = | 52 (1.000) | 3 (0.060) | 3/256 | NT | 5.4% | coding (221/1059 nt) | truD | tRNA pseudouridine(13) synthase TruD |
| ? | NC_002947 | 1815339 = | 56 (1.120) | coding (257/1059 nt) | truD | tRNA pseudouridine(13) synthase TruD | |||||
CGCGCTGCAGTTTGCGCTGGTGACGCACCTGCTTGAGCACACGCAGGCTGGCATCCTCGGCACGCGACAGATCCGGATCGGCCTTGCCCGGCAGGTGCAGGCTGAACCACTGGCGGGTCAGCGCCTGGCGGTCCTTCAGGCCGGCGTAGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1815455‑1815303‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaCCCGCCAGTGGTTCAGCCTGCACCTGCCGGGCAAGGCCGATCCGGATCTGTCGCGTGCCGAGGATGCCAGCCTGCGTGTGCTCAAGCAGGTGCGTCACCAGCGCAAACTGCAGCGCGGCGCGCATTCGGCCAACGGGTTCACCTTGC > NC_002947/1815339‑1815485 CGCGCTGCAGTTTGCGCTGGTGACGCACCTGCTTGAGCACACGCAGGCTGGCATCCTCGGCACGCGACAGATCCGGATCGGCCTTGCCCGGCAGGTGCAGGCTGAACCACTGGCGGGTCAGCGCCTGGCGGTCCTTCAGGCCGGCGTAG < 7:288782/149‑1 CGCTGCAGTTTGCGCTGGTGACGCACCTGCTTGAGCACACGCAGGCTGGCATCCTCGGCACGCGACAGATCCGGATCGGCCTTGCCCGGCAGGTGCAGGCTGAACCACTGGCGGGTCAGCGCCTGGCGGTCCTTCAGGCCGGCGTAGCT < 6:260065/149‑1 GGGTCAGCGCCTGGCGGTCCTTCAGGCCGGCGTAGCTGACCCGCCAGTGGTTCAGCCTGCACCTGCCGGGCAAGGCCGATCCGGATCTGTCGCGTGCCGAGGATGCCAGCCTGCGTGTGCTCAAGCAGGTGCGTCACCAGCGCAAACTG > 1:87952/1‑149 GTCAGCGCCTGGCGGTCCTTCAGGCCGGCGTAGCTGACCCGCCAGTGGTTCAGCCTGCACCTGCCGGGCAAGGCCGATCCGGATCTGTCGCGTGCCGAGGATGCCAGCCTGCGTGTGCTCAAGCAGGTGCGTCACCAGCGCAAACTG > 8:161164/1‑147 TCAGCGCCTGGCGGTCCTTCAGGCCGGCGTAGCTGACCCGCCAGTGGTTCAGCCTGCACCTGCCGGGCAAGGCCGATCCGGATCTGTCGCGTGCCGAGGATGCCAGCCTGCGTGTGCTCAAGCAGGTGCGTCACCAGCGCAAACTGCAG < 7:161164/149‑1 ACCCGCCAGTGGTTCAGCCTGCACCTGCCGGGCAAGGCCGATCCGGATCTGTCGCGTGCCGAGGATGCCAGCCTGCGTGTGCTCAAGCAGGTGCGTCACCAGCGCAAACTGCAGCGCGGCGCGCATTCGGCCAACGGGTTCACCTTGC < 5:260065/148‑1 ACCCGCCAGTGGTTCAGCCTGCACCTGCCGGGCAAGGCCGATCCGGATCTGTCGCGTGCCGAGGATGCCAGCCTGCGTGTGCTCAAGCAGGTGCGTCACCAGCGCAAACTGCAGCGCGGCGCGCATTCGGCCAACGGGTTCACCTTGC < 8:288782/148‑1 CGCGCTGCAGTTTGCGCTGGTGACGCACCTGCTTGAGCACACGCAGGCTGGCATCCTCGGCACGCGACAGATCCGGATCGGCCTTGCCCGGCAGGTGCAGGCTGAACCACTGGCGGGTCAGCGCCTGGCGGTCCTTCAGGCCGGCGTAGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1815455‑1815303‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaCCCGCCAGTGGTTCAGCCTGCACCTGCCGGGCAAGGCCGATCCGGATCTGTCGCGTGCCGAGGATGCCAGCCTGCGTGTGCTCAAGCAGGTGCGTCACCAGCGCAAACTGCAGCGCGGCGCGCATTCGGCCAACGGGTTCACCTTGC > NC_002947/1815339‑1815485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |