New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2076009 = | 50 (0.960) | 5 (0.100) | 4/252 | NT | 9.4% | coding (525/879 nt) | PP_5479 | LysR family transcriptional regulator |
? | NC_002947 | 2076057 = | 49 (0.990) | coding (573/879 nt) | PP_5479 | LysR family transcriptional regulator |
AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2076162‑2076009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgaAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCG > NC_002947/2076057‑2076202 AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCA < 2:181312/149‑1 CACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGG < 5:211322/130‑1 CACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGG > 6:211322/1‑130 AACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAG > 1:4991/1‑116 AACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAG < 2:4991/116‑1 CTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGG > 3:106115/1‑149 CTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGG > 3:272199/1‑149 TTCGCATGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGG > 5:321620/1‑149 CGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCA > 1:18492/1‑149 CGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGG < 6:321620/146‑1 CGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCG < 6:119339/149‑1 AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2076162‑2076009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgaAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCG > NC_002947/2076057‑2076202 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |