| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2814961 = | 52 (1.000) | 3 (0.060) | 3/250 | NT | 6.0% | coding (1098/2382 nt) | pheT | phenylalanine‑‑tRNA ligase subunit beta |
| ? | NC_002947 | 2815002 = | 45 (0.920) | coding (1139/2382 nt) | pheT | phenylalanine‑‑tRNA ligase subunit beta | |||||
CAAGCATCTGGGTGATGCGTTCGGCGCGCAGGGTGACCGGGGCTACTTGTGGCAGGTGCTGTTCGCTGACCGCTTCGACCACAGGGCCGGCTTCGCCGCCAACGATGTCCAGCAGCAACTGGGTGGCGCGCTCCATGGCTTCGCGGGCCAGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2815115‑2814961‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagttgcTGCTGGACATCGTTGGCGGCGAAGCCGGCCCTGTGGTCGAAGCGGTCAGCGAACAGCACCTGCCACAAGTAGCCCCGGTCACCCTGCGCGCCGAACGCATCACCCAGATGCTTGGCATGGAAATGGACCCAGCCCAGGTCGAGC > NC_002947/2815002‑2815145 CAAGCATCTGGGTGATGCGTTCGGCGCGCAGGGTGACCGGGGCTACTTGTGGCAGGTGCTGTTCGCTGACCGCTTCGACCACAGGGCCGGCTTCGCCGCCAACGATGTCCAGCAGCAACTGGGTGGCGCGCTCCATGGCTTCGCGGGC > 4:148998/1‑148 AAGCATCTGGGTGATGCGTTCGGCGCGCAGGGTGACCGGGGCTACTTGTGGCAGGTGCTGTTCGCTGACCGCTTCGACCACAGGGCCGGCTTCGCCGCCAACGATGTCCAGCAGCAACTGGGTGGAGCGCTCCATGGCTTCGCGGGC > 1:21027/1‑147 AGCATCTGGGTGATGCGTTCGGCGCGCAGGGTGACCGGGGCTACTTGTGGCAGGTGCTGTTCGCTGACCGCTTCGACCACAGGGCCGGCTTCGCCGCCAACGATGTCCAGCAGCAACTGGGTGGCGCGCTCCATGGCTTCGCGGGCCAG < 2:153189/149‑1 gCTGGGTGATGCGTTCGGCGCGCAGGGTGACCGGGGCTACTTGTGGCAGGTGCTGTTCGCGGACCGCTTCGACCACAGGGCCGGCTTCGCCGCCAACGATGTCCAGCAGCAACTGGGGGGCGCGCTCCATCGCTTCGCGGGCCAGTTGC < 4:29002/148‑1 TGGGTGATGCGTTCGGCGCGCAGGGTGACCGGGGCTACTTGTGGCAGGTGCTGTTCGCTGACCGCTTCGACCACAGGGCCGGCTTCGCCGCCAACGATGTCCAGCAGCAACTGGGTGGCGCGCTCCATGGCTTCGCGGGCCAGTTGC > 2:68929/1‑147 GGGCTACTTGTGGCAGGTGCTGTTCGCTGACCGCTTCGACCACAGGGCCGGCTTCGCCGCCAACGATGTCCAGCAGCAACTGGGTGGCGCGCTCCATGGCTTCGCGGGCCAGTTGC > 6:313314/1‑116 CAGCAACTGGGTGGCGCGCTCCATGGCTTCGCGGGCCAGTTGCTGCTGGACATCGTTGGCGGCGAAGCCGGCCCTGTGGTCGAAGCGGTCAGCGAACAGCACCTGCCACAAGTAGCCCCGGTCACCCTGCGCGCCGAAC < 5:81896/139‑1 CAGCAACTGGGTGGCGCGCTCCATGGCTTCGCGGGCCAGTTGCTGCTGGACATCGTTGGCGGCGAAGCCGGCCCTGTGGTCGAAGCGGTCAGCGAACAGCACCTGCCACAAGTAGCCCCGGTCACCCTGCGCGCCGAAC > 6:81896/1‑139 GCAACTGGGTGGCGCGCTCCATGGCTTCGCGGGCCAGTTGCTGCTGGACATCGTTGGCGGCGAAGCCGGCCCTGTGGTCGAAGCGGTCAGCGAACAGCACCTGCCACAAGTAGCCCCGGTCACCCTGCGCGCCGAACGCATCACC > 6:19998/1‑145 AGTTGCTGCTGGACATCGTTGGCGGCGAAGCCGGCCCTGTGGTCGAAGCGGTCAGCGAACAGCACCTGCCACAAGTAGCCCCGGTCACCCTGCGCGCCGAACGCATCACCCAGATGCTTGGCATGGAAATGGACCCAGCCCAGGTCGAG < 5:262907/149‑1 GTTGCTGCTGGACATCGTTGGCGGCGAAGCCGGCCCTGTGGTCGAAGCGGTCAGCGAACAGCACCTGCCACAAGTAGCCCCGGTCACCCTGCGCGCCGAACGCATCACCCAGATGCTTGGCATGGAAATGGACCCAGCCCAGGTCGAGC < 4:199645/149‑1 CAAGCATCTGGGTGATGCGTTCGGCGCGCAGGGTGACCGGGGCTACTTGTGGCAGGTGCTGTTCGCTGACCGCTTCGACCACAGGGCCGGCTTCGCCGCCAACGATGTCCAGCAGCAACTGGGTGGCGCGCTCCATGGCTTCGCGGGCCAGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2815115‑2814961‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagttgcTGCTGGACATCGTTGGCGGCGAAGCCGGCCCTGTGGTCGAAGCGGTCAGCGAACAGCACCTGCCACAAGTAGCCCCGGTCACCCTGCGCGCCGAACGCATCACCCAGATGCTTGGCATGGAAATGGACCCAGCCCAGGTCGAGC > NC_002947/2815002‑2815145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |