| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3782190 = | 56 (1.080) | 4 (0.080) | 4/256 | NT | 6.8% | coding (127/846 nt) | nikC | nickel ABC transporter permease |
| ? | NC_002947 | 3782265 = | 56 (1.120) | coding (202/846 nt) | nikC | nickel ABC transporter permease | |||||
CCAGCGCCAGGGTCAGCATCACGCTGCCCAAGGACAGGCGCGTGCCGACGATCAACCGCGAAAGCAGGTCGCGCCCGAGGTGGTCTGTGCCCAGCCAGTGACGGGCGTCTGGCGCCTGCAGGCGCTGGCCGAGGTCGACCAGGTCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3782337‑3782190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCTGGTACTGGCCCTGGGGCTCGCGGTCGGCGGTGTGGCCGGGTTCGTAGGCGGGCGCACCGACCTGCTGCTGATGCGCC > NC_002947/3782265‑3782412 CCAGCGCCAGGGTCAGCATCACGCTGCCCAAGGACAGGCGCGTGCCGACGATCAACCGCGAAAGCAGGTCGCGCCCGAGGTGGTCTGTGCCCAGCCAGTGACGGGCGTCTGGCGCCTGCAGGCGCTGGCCGAGGTCGACCAGGTCGGG < 3:160344/148‑1CCAGCGCCAGGGTCAGCATCACGCTGCCCAAGGACAGGCGCGTGCCGACGATCAACCGCGAAAGCAGGTCGCGCCCGAGGTGGTCTGTGCCCAGCCAGTGACGGGCGTCTGGCGCCTGCAGGCGCTGGCCGAGGTCGACCAGGTCGGG > 4:160344/1‑148 GCGCCCGAGGTGGTCTGTGCCCAGCCAGTGACGGGCGTCTGGCGCCTGCAGGCGCTGGCCGAGGTCGACCAGGTCGGGCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCT > 1:134249/1‑149 GCCCGAGGTGGTCTGTGCCCAGCCAGTGACGGGCGTCTGGCGCCTGCAGGCGCTGGCCGAGGTCGACCAGGTCGGGCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCTGG > 8:154565/1‑149 TGCCCAGCCAGTGACGGGCGTCTGGCGCCTGCAGGCGCTGGCCGAGGTCGACCAGGTCGGGCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCTGGTACTGGCCCTGG < 2:134249/146‑1 GCCGAGGTCGACCAGGTCGGGCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCTGGTACTGGCCCTGGGGCTCGCGGTCGGCGGTGTGGCCGGGTTCGTAGGCGGGCGC < 7:154565/147‑1 TCGGGCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCTGGTACTGGCCCTGGGGCTCGCGGTCGGCGGTGTGGCCGGGTTCGTAGGCGGGCGCACCGACCTGCTGCTGATG > 7:150444/1‑149 GGCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCTGGTACTGGCCCTGGGGCTCGCGGTCGGCGGTGTGGCCGGGTTCGTAGGCGGGCGCACCGACCTGCTGCTGATGCGC < 3:96892/149‑1 GCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCTGGTACTGGCCCTGGGGCTCGCGGTCGGCGGTGTGGCCGGGTTCGTAGGCGGGCGCACCGACCTGCTGCTGATGCGCC > 5:120274/1‑149 GCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCTGGTACTGGCCCTGGGGCTCGCGGTCGGCGGTGTGGCCGGGTTCGTAGGCGGGCGCACCGACCTGCTGCTGATGCGCC > 5:295263/1‑149 CCAGCGCCAGGGTCAGCATCACGCTGCCCAAGGACAGGCGCGTGCCGACGATCAACCGCGAAAGCAGGTCGCGCCCGAGGTGGTCTGTGCCCAGCCAGTGACGGGCGTCTGGCGCCTGCAGGCGCTGGCCGAGGTCGACCAGGTCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3782337‑3782190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggCGCGACCTGCTTTCGCGGTTGATCGTCGGCACGCGCCTGTCCTTGGGCAGCGTGATGCTGACCCTGGCGCTGGTACTGGCCCTGGGGCTCGCGGTCGGCGGTGTGGCCGGGTTCGTAGGCGGGCGCACCGACCTGCTGCTGATGCGCC > NC_002947/3782265‑3782412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |