New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3970756	NA (NA)	5 (0.100)	5/252	NT	NA	coding (675/1536 nt)	PP_3501	transposase
	?	NC_002947	= 3970783	NA (NA)					coding (702/1536 nt)	PP_3501	transposase

TACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3970602‑3970756 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagtggCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCG  <  NC_002947/3970783‑3970636                                                                                                                                                                                                                                                                                                                 tagCGGCGCAGGTTATCGACACAGGTGTCCCGACCGCTGGCTTGGTGGCCGATGTGATGGTGGCCTTGTTTGCCGATGACTTGCCGCTGTACCGGCAGGAGAAAATGTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCC                                                                                                                                                            <  4:46435/146‑1  ACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAGGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCC                                                                                                                                                            >  6:277013/1‑148    CGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAG                                                                                                                                                         >  3:252454/1‑149     GGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGT                                                                                                                                                        <  3:164582/149‑1       CGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGG                                                                                                                                                      >  4:238094/1‑149                                 ACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGG‑‑‑‑‑GTCGCACACCGGTTTGTCCGAC                                                                                                                           >  8:160584/1‑145                                 ACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGG‑‑‑‑‑GTCGCACACCGGTTTGTCCGAC                                                                                                                           <  7:160584/145‑1                                                GCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAG                                                                                                              <  2:71073/148‑1                                                          TGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGG                                                                                                                    >  5:245666/1‑132                                                          TGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGG                                                                                                                    <  6:245666/132‑1                                                                                                                                                        GTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCT     <  5:231763/149‑1                                                                                                                                                        GTGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCT     >  6:135660/1‑149                                                                                                                                                         TGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTG    <  1:189685/149‑1                                                                                                                                                         TGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAG                                               >  7:129931/1‑106                                                                                                                                                         TGGCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAG                                               <  8:129931/106‑1                                                                                                                                                           GCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCG  <  4:140879/149‑1                                                                                                                                                           GCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCG  >  4:119680/1‑149                                                                                                                                                                                                                                                                                                                 TACCGGCGCAGGTTATCGACAAAGGTGTCCCGACCGCAGGCTTGCTGGCCCATGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCCCAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3970602‑3970756 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagtggCTGGAGTCGCACACCGGTTTGTCCGACCCACTGGGCCAAGGTCGAGCGAGCAATCGCCAGCCCGGCGCGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACATGGGCCAGCAAGCCTGCG  <  NC_002947/3970783‑3970636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.