New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4479975 =	62 (1.190)	5 (0.100)	5/254	NT	8.5%	coding (110/234 nt)	PP_3971	hypothetical protein
	?	NC_002947	4480013 =	49 (0.990)					coding (148/234 nt)	PP_3971	hypothetical protein

CAAACCTCTATAGGTGGGGCCTGGAATATCAGCCTTTGCTGTGCTCGTCGGAAGTGGGCCCAGTGCCTCGCTTGATGCCTCGCGGGCCAGCAACGCCCCATATCCCCAGGCCAACAAGCGGTAGGGCCACGATCAGGAGAGCCCAGGCCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4480127‑4479975 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCAAAGGCTGATATTCCAGGCCCCACCTATAGAGGTTTGCATAATGGTCGATCAAGCGACAGGTATGAA  >  NC_002947/4480013‑4480157                                                                                                                                                                                                                                                                                                            CAAACCTCTATAGGTGGGGCCTGGATTATCAGCCTTTGCTGTGCTCGTCGGAAGTGGGCCCAGTGCCTCGCTTGATGCCTCGCGGGCCAGCAACGCCCCATATCCCCAGGCGAACAAGCGGTAGGGCCACGATCAGGAGAGCCCAGGC                                                                                                                                                        <  1:267351/148‑1                                                                                                              GCCAACAAGCGGTAGGGCCACGATCAGGAGAGCCCAGGCCGCTTGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCAAAGGCTGATATTCCAGGCCCCACCT                                           >  6:326983/1‑148                                                                                                                CAACAAGCGGTAGGGCCACGATCAGGAGAGCCCAGGCCGCTTGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCAAAGGCTGA                                                            >  3:6503/1‑129                                                                                                                CAACAAGCGGTAGGGCCACGATCAGGAGAGCCCAGGCCGCTTGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCAAAGGCTGA                                                            <  4:6503/129‑1                                                                                                                 AACAAGCGGTAGGGCCACGATCAGGAGAGCCCAGGCCGCTTGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCAAAGGCTGATATTCCAGGCCCCACCTA                                          >  1:327753/1‑146                                                                                                                                       AGGAGAGCCCAGGCCGCTTGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCAAAGGCTGATATTCCAGGCCCCACCTATAGAGGTTTGCATAATGGTCGATC                  <  5:326983/148‑1                                                                                                                                                      GCTTGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCAAAGGCTGATATTCCAGGCCCCACCTATAGAGGTTTGCATAATGGTCGATCAAGCGACAGGTATGAA  <  1:198352/149‑1                                                                                                                                                       CTTGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCA                                                                    >  3:286381/1‑82                                                                                                                                                       CTTGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCA                                                                    <  4:286381/82‑1                                                                                                                                                                                                                                                                                                            CAAACCTCTATAGGTGGGGCCTGGAATATCAGCCTTTGCTGTGCTCGTCGGAAGTGGGCCCAGTGCCTCGCTTGATGCCTCGCGGGCCAGCAACGCCCCATATCCCCAGGCCAACAAGCGGTAGGGCCACGATCAGGAGAGCCCAGGCCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4480127‑4479975 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttGTTGGCCTGGGGATATGGGGCGTTGCTGGCCCGCGAGGCATCAAGCGAGGCACTGGGCCCACTTCCGACGAGCACAGCAAAGGCTGATATTCCAGGCCCCACCTATAGAGGTTTGCATAATGGTCGATCAAGCGACAGGTATGAA  >  NC_002947/4480013‑4480157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.