New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5040496	50 (0.960)	4 (0.080)	4/248	NT	8.8%	coding (8/1122 nt)	PP_4446	group II intron‑encoding maturase
	?	NC_002947	= 5040543	36 (0.740)					intergenic (‑40/‑81)	PP_4446/PP_5680	group II intron‑encoding maturase/Cro/CI family transcriptional regulator

CCATACGAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5040340‑5040496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcccgatCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACAG  <  NC_002947/5040543‑5040402                                                                                                                                                                                                                                                                                                             CCATACGAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGT                                                                                                                                                        >  1:281312/1‑149   ATACGAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTG                                                                                                                                                      <  1:38525/149‑1       GAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCC                                                                                                                                                   >  8:246350/1‑148                  AAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGATCTCACTGGC                                                                                                                                       >  3:220321/1‑149                                                               CTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGG                                                                                           <  4:220321/148‑1                                                                              CTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGATCTCACTGGCCCGCTGCGTCGGCAGCGGCGTCAGCACATCTTTGAGATATCGGGCAA                                                                                        >  1:272996/1‑136                                                                              CTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAA                                                                                        <  2:272996/136‑1                                                                                                                                                     TTGCCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTAC    <  5:295181/149‑1                                                                                                                                                       GCCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACA   <  4:216629/148‑1                                                                                                                                                        CCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACAG  >  1:46579/1‑148                                                                                                                                                        CCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACAG  >  5:99954/1‑148                                                                                                                                                         CCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACAG  >  3:205807/1‑147                                                                                                                                                                                                                                                                                                             CCATACGAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5040340‑5040496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcccgatCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACAG  <  NC_002947/5040543‑5040402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.