New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5091077	66 (1.270)	3 (0.060)	3/250	NT	5.1%	intergenic (‑141/+7)	astA‑II/astC	arginine N‑succinyltransferase subunit alpha/acetylornithine aminotransferase
	?	NC_002947	= 5091118	50 (1.020)					coding (1187/1221 nt)	astC	acetylornithine aminotransferase

GCATCACCAGCATGGTGTCACTCCTTTGGAATACGGGCCATTCACGTCGGCACGGAAAAACGGCAGGCACCCAGGCACCTGCACTGGAATCGGGTATCGCCGACCCGGATCAGCCTCGGGCTGAGGCTGCGCCAGGGCCGGCGAAAGGACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5090924‑5091077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaccgctTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCGGTCCTTTCGCCGGCCCTGGCGCAGCCTCAGCCCGAGGCTGATCCGGGTCGGCGATACCCGATTCCAGTGCAGGTGCCTGGGTGCCTGCCGTTTTTCCGTGCC  <  NC_002947/5091118‑5090972                                                                                                                                                                                                                                                                                                               GCATCACCAGCATGGTGTCACTCCTTTGGAATACGGGCCATTCACGTCGGCACGGAAAAACGGCAGGCACCCAGGCACCTGCACTGGAATCGGGTATCGCCGACCCGGATCAGCCTCGGGCTGAGGCTGCGCCAGGGCCGGCGAAAGGA                                                                                                                                                          <  7:186978/149‑1     CACCAGCATGGTGTCACTCCTTTGGAATACGGGCCATTCACGTCGGCACGGAAAAACGGCAGGCACCCAGGCACCTGCACTGGAATCGGGTATCGCCGACCCGGATCAGCCTCGGGCTGAGGCTGCGCCAGGGCCGGCGAAAGGACCGC                                                                                                                                                      >  4:6424/1‑149                                                           AACGGCAGGCACCCAGGCACCTGCACTGGAATCGGGTATCGCCGACCCGGATCAGCCTCGGGCTGAGGCTGCGCCAGGGCCGGCGAAAGGACCGCTTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCGGTCCTTTC                                                                                                <  1:139157/149‑1                                                                                                         CCGGATCAGCCTCGGGCTGAGGCTGCGCCAGGGCCGGCGAAAGGACCGCTTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCG                                                                                                        >  7:158782/1‑95                                                                                                         CCGGATCAGCCTCGGGCTGAGGCTGCGCCAGGGCCGGCGAAAGGACCGCTTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCG                                                                                                        <  8:158782/95‑1                                                                                                                                                    GACCGCTTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCGGTCCTTTCGCCGGCCCTGGCGCAGCCTCTGCCCGAGGCTGATCCGGGTCGGCGATACCCGATTTCAGTGCAGGTGCCTGGGTGCCTGCCGTTTTT         <  1:198472/147‑1                                                                                                                                                    GACCGCTTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCGGTCCTTTCGCCGGCCCTGGCGCAGCCTCAGCCCGAGGCTGATCCGGGTCGGCGATACCCGATTCCAGTGCAGGTGCCTGGGTGCCTGCCGTTTTT         <  6:61385/147‑1                                                                                                                                                     ACCGCTTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCGGTCCTTTCGCCGGCCCTGGCGCAGCCTCAGCCCGAGGCTGATCCGGGTCGGCGATACCCGATTCCAGTGCAGGTGCCTGGGTGCCTGCCGTTTTTCCG      <  2:170426/149‑1                                                                                                                                                        GCTTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCGGTCCTTTCGCCGGCCCTGGCGCAGCCTCAGCCCGAGGCTGATCCGGGTCGGCGATACCCGATTCCAGTGCAGGTGCCTGGGTGCCTGCCGTTTTTCCGTGC   >  7:83267/1‑149                                                                                                                                                          TTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCGGTCCTTTCGCCGGCCCTGGCGCAGCCTCAGCCCGAGGCTGATCCGGGTCGGCGATACCCGATTCCAGTGCAGGTGCCTGGGTGCCTGCCGTTTTTCCGTGCC  >  1:174094/1‑148                                                                                                                                                                                                                                                                                                               GCATCACCAGCATGGTGTCACTCCTTTGGAATACGGGCCATTCACGTCGGCACGGAAAAACGGCAGGCACCCAGGCACCTGCACTGGAATCGGGTATCGCCGACCCGGATCAGCCTCGGGCTGAGGCTGCGCCAGGGCCGGCGAAAGGACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5090924‑5091077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaccgctTCGAACGCGCTGTGGCCACACTGACCAAAGGCTGATCCGCCAGCGGTCCTTTCGCCGGCCCTGGCGCAGCCTCAGCCCGAGGCTGATCCGGGTCGGCGATACCCGATTCCAGTGCAGGTGCCTGGGTGCCTGCCGTTTTTCCGTGCC  <  NC_002947/5091118‑5090972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.