New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5458335	64 (1.230)	4 (0.080)	4/258	NT	6.2%	coding (2067/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	= 5458377	59 (1.170)					coding (2109/2607 nt)	leuS	leucine‑‑tRNA ligase

AGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGCCCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCTGCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5458184‑5458335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcGTCCAGGGCGGCAACATCCAGCTTGCCTGGCAGGCCCTGGCTGACGTGAGCCTGAGCCAGACGCCAGACACGGCGCAGGAAGCGGCTGGCACCTTCGACGCCGGAGTCGGACCATTCCAGGCTCATGTCGGGCGGCGAGGCGAACAT  <  NC_002947/5458377‑5458231                                                                                                                                                                                                                                                                                                             AGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGCCCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCTGCGCCGTGTCTGGCGTCTGGCTCAGGCTCAC                                                                                                                                                        <  2:264826/149‑1      ATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGCCCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCTGCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCGT                                                                                                                                                   >  7:294412/1‑149          TCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGCCCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCTGCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCGTCCAG                                                                                                                                               >  6:296733/1‑149                                                ATGTTCGCCTCGCCGCCCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCTGCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCGTCCAGGGCGGCAACATCCAGCTTGCCTGGCAGGCCCTGGCTG                                                                                                          <  5:296733/148‑1                                                  GTTCGCCTCGCCGCCCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCTGCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCGTCCAGGGCGGCAACATCCAGCTTGCCTGGCAGGCCCTGGCTGAC                                                                                                        <  8:294412/148‑1                                                      GCCTCACCGCCCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCTGCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCGTCCAGGGCGGCAACATCCAGCTTGCCTGGCAGGCCCTGGCTGACGTGA                                                                                                    <  6:288522/148‑1                                                                                                                                                       TCGTCCAGGGCGGCAACATCCAGCTTGCCTGGCAGGCCCTGGCTGACGTGAGCCTGAGCCAGACGCCAGACACGGCGCAGGAAGCGGCTGGCACCTTCGACGCCGGAGTCGGACCATTCCAGGCTCATGTCGGGCGGCGAGGCGAACAT  <  7:198106/149‑1                                                                                                                                                                                                                                                                                                             AGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGCCCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCTGCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5458184‑5458335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcGTCCAGGGCGGCAACATCCAGCTTGCCTGGCAGGCCCTGGCTGACGTGAGCCTGAGCCAGACGCCAGACACGGCGCAGGAAGCGGCTGGCACCTTCGACGCCGGAGTCGGACCATTCCAGGCTCATGTCGGGCGGCGAGGCGAACAT  <  NC_002947/5458377‑5458231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.