New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 548777939 (0.750)3 (0.060) 3/252 NT 5.9% coding (1108/2772 nt) PP_4824 two‑component system sensor histidine kinase/response regulator
?NC_002947 = 5487836 59 (1.200)coding (1165/2772 nt) PP_4824 two‑component system sensor histidine kinase/response regulator

CGCCTGTTCAGCCTGGCCATGGTGGTGTTCAACCTCGGAGGCCTGGTACTGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5487629‑5487779
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCAG  <  NC_002947/5487836‑5487689
                                                                                                                                                                                                                                                                                                           
CGCCTGTTCAGCCTGGCCATGGTGGTGTTCAACCTCGGAGGCCTGGTACTGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGC                                                                                                                                                        <  2:230003/149‑1
                                                               CTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACC                                                                                           <  1:39674/147‑1
                                                                                         CTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCA                                                                                                 <  5:173881/115‑1
                                                                                         CTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCA                                                                                                 >  6:173881/1‑115
                                                                                                                                                CTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCC        <  7:35807/149‑1
                                                                                                                                                CTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCC        >  8:291425/1‑149
                                                                                                                                                     GGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCA   <  3:134824/149‑1
                                                                                                                                                     GGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCA                                                         >  3:95738/1‑95
                                                                                                                                                     GGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCA                                                         <  4:95738/95‑1
                                                                                                                                                      GCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCAG  <  1:301940/149‑1
                                                                                                                                                                                                                                                                                                           
CGCCTGTTCAGCCTGGCCATGGTGGTGTTCAACCTCGGAGGCCTGGTACTGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5487629‑5487779
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCAG  <  NC_002947/5487836‑5487689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.