New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5562111	53 (1.020)	3 (0.060)	3/258	NT	5.4%	coding (774/1218 nt)	hflK	integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	= 5562148	53 (1.050)					coding (737/1218 nt)	hflK	integral membrane ATP‑dependent zinc metallopeptidase

CCTCACCCTTGGCGCGGGCAATGACTTCGTCGCGGTAACCATTGGCATCCTCGATGATGCGCTGGGCCTGACCACGGGCTTCCGGCACCACGCCATTGGCATAGGACTCGGCCTGGTTGCGGGCACGCTGCTCGTCTTCGCGGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5561963‑5562111 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggCCCCGCGTGAAGTGCAGGAAGCCTTCGACGACGTGATCCGCGCCCGCGAAGACGAGCAGCGTGCCCGCAACCAGGCCGAGTCCTATGCCAATGGCGTGGTGCCGGAAGCCCGTGGTCAGGCCCAGCGCATCATCGAGGATGCCAATG  <  NC_002947/5562148‑5562002                                                                                                                                                                                                                                                                                                          CCTCACCCTTGGCGCGGGCAATGACTTCGTCGCGGTAACCATTGGCATCCTCGATGATGCGCTGGGCCTGACCACGGGCTTCCGGCACCACGCCATTGGCATAGGACTCGGCCTGGTTGCGGGCACGCTGCTCGTCTTCGCGGGCGCG                                                                                                                                                      >  4:41785/1‑148                                GCGGTAACCATTGGCATCCTCGATGATGCGCTGGGCCTGACCACGGGCTTCCGGCACCACGCCATTGGCATAGGACTCGGCCTGGTTGCGGGCACGCTGCTCGTCTTCGCGGGCGCGGCCCCGCGTGAAGTGCAGGAAGCCTTCGACGA                                                                                                                      >  3:36910/1‑149                                      ACCATTGGCATCCTCGATGATGCGCTGGGCCTGACCACGGGCTTCCGGCACCACGCCATTGGCATAGGACTCGGCCTGGTTGCGGGCACGCTGCTCGTCTTCGCGGGCGCGGCCCCGCGTGAAGTGCAGGAAGCCTTCGACGACGTGA                                                                                                                 <  4:36910/148‑1                                                                         CACGGGCTTCCGGCACCACGCCATTGGCATAGGACTCGGCCTGGTTGCGGGCACGCTGATCGTCTTCGCGGGCGCGGCCCCGCGTGAAGTGCAGGAAGCCTTCGACGACGTGATCCG                                                                                                             <  8:160132/117‑1                                                                                                                                                    GGCCCCGCGTGAAGTGCAGGAAGCCTTCGACGACGTGATCCGCGCCCGCGAAGACGAGCAGCGTGCCCGCAACCAGGCCGAGTCCTATGCCAATGGCGTGGTGCCGGAAGCCCGTGGTCAGGCCCAGCGCATCATCGAGGATGCCAATG  <  2:216519/149‑1                                                                                                                                                     GCCCCGCGTGAAGTGCAGGAAGCCTTCGACGACGTGATCCGCGCCCGCGAAGACGAGCAGCGTGCCCGCAACCAGGCCGAGTCCTATGCCAATGGCGTGGTGCCGGAAGCCCGTGGTCAGGCCCAGCGCAT                   >  3:316265/1‑131                                                                                                                                                     GCCCCGCGTGAAGTGCAGGAAGCCTTCGACGACGTGATCCGCGCCCGCGAAGACGAGCAGCGTGCCCGCAACCAGGCCGAGTCCTATGCCAATGGCGTGGTGCCGGAAGCCCGTGGTCAGGCCCAGCGCAT                   <  4:316265/131‑1                                                                                                                                                                                                                                                                                                          CCTCACCCTTGGCGCGGGCAATGACTTCGTCGCGGTAACCATTGGCATCCTCGATGATGCGCTGGGCCTGACCACGGGCTTCCGGCACCACGCCATTGGCATAGGACTCGGCCTGGTTGCGGGCACGCTGCTCGTCTTCGCGGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5561963‑5562111 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggCCCCGCGTGAAGTGCAGGAAGCCTTCGACGACGTGATCCGCGCCCGCGAAGACGAGCAGCGTGCCCGCAACCAGGCCGAGTCCTATGCCAATGGCGTGGTGCCGGAAGCCCGTGGTCAGGCCCAGCGCATCATCGAGGATGCCAATG  <  NC_002947/5562148‑5562002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.