New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5620750	55 (1.060)	3 (0.060)	3/250	NT	5.1%	coding (514/774 nt)	PP_4939	hypothetical protein
	?	NC_002947	= 5620766	61 (1.250)					coding (498/774 nt)	PP_4939	hypothetical protein

CAATGGGCAAGGTCACGTGATTGCCGAATCCAGTGTGCAATACTGCGTCACCCTCCAAGGTGACCGCTGTCAGATTTAACTCAGCGTAGCGGCGGGAAAGCGCCTTTTCTCCAGCATAGGCGGCAAATGGCGCACAGCGCTGGTAATCGCTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5620597‑5620750 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgctcaaCCCTGGGCTGCGCCGATTGAGCGATTACCA  <  NC_002947/5620766‑5620737                                                                                                                                                                                          CAATGGGCAAGGTCACGTGATTGCCGAATCCAGTGTGCAATACTGCGTCACCCTCCAAGGTGACCGCTGTCAGATTTAACTCAGCGTAGCGGCGGGAAAGCGCCTTTTCTCCAGCATAGGCGGCAAATGGCGCACAGCGCTGGTAATC                                      <  2:284332/148‑1 CAATGGGCAAGGTCACGTGATTGCCGAATCCAGTGTGCAATACTGCGTCACCCTCCAAGGTGACCGCTGTCAGATTTAACTCAGCGTAGCGGCGGGAAAGCGCCTTTTCTCCAGCATAGGCGGCAAATGGCGCACAGCGCTGGTAATC                                      <  7:295356/148‑1  AATGGGCAAGGTCACGTGATTGCCGAATCCAGTGTGCAATACTGCGTCACCCTCCAAGGTGACCGCTGTCAGATTTAACTCAGCGTAGCGGCGGGAAAGCGCCTTTTCTCCAGCATAGGCGGCAAATGGCGCACAGCGCTGGTAATCGC                                    <  1:167678/149‑1                                    TGCAATACTGCGTCACCCTCCAAGGTGACCGCTGTCAGATTTAACTCAGCGTAGCGGCGGGAAAGCGCCTTTTCTCCAGCATAGGCGGCAAATGGCGCACAGCGCTGGTAATCGCTCAACCCTGGGCTGCGCCGATTGAGCGATTACCA  <  2:242646/149‑1                                                                                    GCGTAGCGGCGGGAAAGCGCCTTTTCTCCAGCATAGGCGGCAAATGGCGCACAGCGCTGGTAATCGCTCAACCCTGGGCTGCGCCGATTGAGCGATTAC    >  7:176250/1‑99                                                                                    GCGTAGCGGCGGGAAAGCGCCTTTTCTCCAGCATAGGCGGCAAATGGCGCACAGCGCTGGTAATCGCTCAACCCTGGGCTGCGCCGATTGAGCGATTAC    <  8:176250/99‑1                                                                                                                                                                                          CAATGGGCAAGGTCACGTGATTGCCGAATCCAGTGTGCAATACTGCGTCACCCTCCAAGGTGACCGCTGTCAGATTTAACTCAGCGTAGCGGCGGGAAAGCGCCTTTTCTCCAGCATAGGCGGCAAATGGCGCACAGCGCTGGTAATCGCTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5620597‑5620750 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgctcaaCCCTGGGCTGCGCCGATTGAGCGATTACCA  <  NC_002947/5620766‑5620737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.