New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5718380 =	67 (1.290)	3 (0.060)	3/256	NT	4.5%	coding (1079/1917 nt)	PP_5020	methyl‑accepting chemotaxis protein
	?	NC_002947	5718426 =	62 (1.240)					coding (1125/1917 nt)	PP_5020	methyl‑accepting chemotaxis protein
Rejected: Frequency below/above cutoff threshold.

CGTGCACGGTGGCAGTCATCTGGTTCATCGCAGTCGCCACCTGGTCGGTTTCGACCTTCTGATTGTTGACCCCGGCGCTGGTCTGTTCTGTCACCGCCGACAGCTCCTCGGCAGCGCTGGCGATCTGCGTCACGCCATCGCCAATGCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5718532‑5718380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTGCCACCGTGCACGAAGTGGCACGCAATGCCGAACAGGCTTCGGAAGCCGCCTTG  >  NC_002947/5718426‑5718573                                                                                                                                                                                                                                                                                                               CGTGCACGGTGGCAGTCATCTGGTTCATCGCAGTCGCCACCTGGTCGGTTTCGACCTTCTGATTGTTGACCCCGGCGCTGGTCTGTTCTGTCACCGCCGACAGCTCCTCGGCAGCGCTGGCGATCTGCGTCACGCCATCGCCAATGCCG                                                                                                                                                          >  7:101220/1‑149  tgGCACGGTGGCAGTCATCTGGTTCATCGCAGTCGCCACCTGGTCGGTTTCGACCTTCTGATTGTTGACCCCGGCGCTGGTCTGTTCTGTCACCGCCGACAGCTCCTCGGCAGCGCTGGCGATCTGCGTCACGCCATCGCCAATGCCGC                                                                                                                                                         <  2:160497/147‑1  GTGCACGGTGGCAGTCATCTGGTTCATCGCAGTCGCCACCTGGTCGGTTTCGACCTTCTGATTGTTGACCCCGGCGCTGGTCTGTTCTGTCACCGCCGACAGCTCCTCGGCAGCGCTGGCGATCTGCGTCACGCCATCGCCAATGCCGC                                                                                                                                                         >  8:243311/1‑149                                                                                                        CTCCTCGGCAGCGCTGGCGATCTGCGTCACGCCATCGCCAATGCCGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCA                                                               <  7:199906/137‑1                                                                                                        CTCCTCGGCAGCGCTGGCGATCTGCGTCACGCCATCGCCAATGCCGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCA                                                               >  8:199906/1‑137                                                                                                         TCCTCGGCAGCGCTGGCGATCTGCGTCACGCCATCGCCAATGCCGCGGAGGAGCTGTCGGCGGTGACAGAGCAGACCCGCGCCGGGGTCCACAATCAGAAGGTCGACACCGAGCAGGTGGCGACTGCGATGAACCAGCTGACTGCCACC                                                  >  3:5598/1‑149                                                                                                                                                     GCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTGCCACCGTGCACGAAGTGGCACGCAATGCCGAACAGGCTTCGGAAGCCGC      >  6:243749/1‑149                                                                                                                                                      CCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTGCCACCGTGCACGAAGTGGCACGCAATGCCGAACAGGCTTCGGAAGCCGCC     >  3:106023/1‑149                                                                                                                                                       CGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTGCCACCGTGCACGAAGTGGCACGCAATGCCGAACAGGCTTCGGAAGCCGCCT    <  3:43229/149‑1                                                                                                                                                         AGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTGCCACCGTGCACGAAGTGGCACGCAATGCCGAACAGGCTTCGGAAGCCGCCTTG  <  4:258656/149‑1                                                                                                                                                                                                                                                                                                               CGTGCACGGTGGCAGTCATCTGGTTCATCGCAGTCGCCACCTGGTCGGTTTCGACCTTCTGATTGTTGACCCCGGCGCTGGTCTGTTCTGTCACCGCCGACAGCTCCTCGGCAGCGCTGGCGATCTGCGTCACGCCATCGCCAATGCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5718532‑5718380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTGCCACCGTGCACGAAGTGGCACGCAATGCCGAACAGGCTTCGGAAGCCGCCTTG  >  NC_002947/5718426‑5718573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.