New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5731397 =	66 (1.270)	3 (0.060)	3/258	NT	4.7%	coding (1159/1206 nt)	hutI	imidazolonepropionase
	?	NC_002947	5731426 =	59 (1.170)					coding (1130/1206 nt)	hutI	imidazolonepropionase
Rejected: Frequency below/above cutoff threshold.

AACGCCCCGCCGACCTGGCCTACTGGCTGGGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5731432‑5731397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGGGCGTTCGATTTGCCAGGCAACGAAGTCAGCCACCTTGCCCACTTGCAGCGAGCCGTGGCTGTCACCCAAGCCCAGCGCCGTGGCAGCGTGCACCGTAACGCCTGCCAGGGCCTCTTCCGGCGTCATGCGGAAGCAGGTGCAGCCCA  >  NC_002947/5731426‑5731573                                                                                                                                                                                          AACGCCCCGCCGACCTGGCCTACTGGCTGGGTGGCGGGGCGTTCGATTTGCCAGGCACCGAAGTCAGCCACCTTGCCCACTTGCAGCGAGCCGTGGCTGTCACCCAAGCCCAGCGCCGTGGCAGCGTGCACCGTCACGCCTGCCAGGGC                                     >  8:218059/1‑149      CCCGCCGACCTGGCCTACTGGCTGGGTGGCGGGGCGTTCGATTTGCCAGGCAACGAAGTCAGCCACCTTGCCCACTTGCAGCGAGCCGTGGCTGTCACCCAAGCCCAGCGCCGTG                                                                  >  7:267487/1‑115      CCCGCCGACCTGGCCTACTGGCTGGGTGGCGGGGCGTTCGATTTGCCAGGCAACGAAGTCAGCCACCTTGCCCACTTGCAGCGAGCCGTGGCTGTCACCCAAGCCCAGCGCCGTG                                                                  <  8:267487/115‑1                                   CGGGGCGTTCGATTTGCCAGGCAACGAAGTCAGCCACCTTGCCCACTTGCAGCGAGCCGTGGCTGTCACCCAAGCCCAGCGCCGTGGCAGCGTGCACCGTAACGCCTGCCAGGGCCTCTTCCTGCGTCATGCGGAAGCAGGTGCAGCCC   <  8:65866/149‑1                                    GGGGCGTTCGATTTGCCAGGCAACGAAGTCAGCCACCTTGCCCACTTGCAGCGAGCCGTGGCTGTCACCCAAGCCCAGCGCCGTGGCAGCGTGCACCGTAACGCCTGCCAGGGCCTCTTCCGGCGTCATGCGGAAGCAGGTGCAGCCCA  <  6:131641/149‑1                                                                                                                                                                                          AACGCCCCGCCGACCTGGCCTACTGGCTGGGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5731432‑5731397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGGGCGTTCGATTTGCCAGGCAACGAAGTCAGCCACCTTGCCCACTTGCAGCGAGCCGTGGCTGTCACCCAAGCCCAGCGCCGTGGCAGCGTGCACCGTAACGCCTGCCAGGGCCTCTTCCGGCGTCATGCGGAAGCAGGTGCAGCCCA  >  NC_002947/5731426‑5731573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.