New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5798882	67 (1.290)	3 (0.060)	3/250	NT	4.6%	coding (981/1590 nt)	PP_5077	hypothetical protein
	?	NC_002947	= 5798978	62 (1.270)					coding (885/1590 nt)	PP_5077	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCATCACCGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5798734‑5798882 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggctgcCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCCGCAGGCATGGGCGA  <  NC_002947/5798978‑5798835                                                                                                                                                                                                                                                                                                       GGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCATCACCGGCTGC                                                                                                                                                  >  7:263181/1‑149       CCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCATCACCGGCTG                                                                                                                                                   >  1:123285/1‑142       CCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCATCACCGGCTG                                                                                                                                                   <  2:123285/142‑1                                                                GCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCATCACCGGCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTC                                                                                   >  8:274492/1‑149                                                                                                        GCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCATCACCGGCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCG                                           <  7:274492/149‑1                                                                                                         CCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCATCACCGGCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGG                                          <  7:282909/149‑1                                                                                                                                                 GCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCGTCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCCGCAGGCATGGGCGA  <  8:259472/149‑1                                                                                                                                                                                                                                                                                                       GGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCATCACCGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5798734‑5798882 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggctgcCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCCGCAGGCATGGGCGA  <  NC_002947/5798978‑5798835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.