| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5947087 = | 43 (0.830) | 3 (0.060) | 3/244 | NT | 6.0% | intergenic (‑79/+127) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho |
| ? | NC_002947 | 5947192 = | 54 (1.130) | intergenic (‑184/+22) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho | |||||
TTCTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5947240‑5947087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccccaatCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCACATACG > NC_002947/5947192‑5947339 TTCTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCC > 1:290397/1‑149 CTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCATCGCGGGCAACCCCCCTCCTGCACAGGTCATTGCGGCCCTTGTATGAGCGGGATTCCGCGAAGGGCTGCAAAGCGGCCC > 6:41216/1‑148 TTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCC > 6:211180/1‑148 CTGTCGATGAAGCTGAATTAAGCGAGGGTTTCAGGGTGGTTTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGTCCGCTCCTTGACTGGTCATTGCGGACCTTGTATGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAAT < 2:261512/148‑1 CTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAAT < 4:311886/148‑1 AGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGA < 3:277243/149‑1 CCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCT > 1:88471/1‑149 CGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTT < 2:88471/149‑1 GGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATC > 6:124913/1‑149 GGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATC > 6:244939/1‑149 GCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCC < 7:205247/149‑1 CCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCCTCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCAC < 6:124126/149‑1 CCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCACA > 3:176423/1‑149 CCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCACA > 6:227443/1‑149 ATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCACATAC > 1:42815/1‑149 ATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCACATAC > 8:208627/1‑149 TCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCACATACG > 5:329848/1‑149 TTCTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5947240‑5947087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccccaatCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCACATACG > NC_002947/5947192‑5947339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |