New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6041621	62 (1.190)	4 (0.080)	4/250	NT	5.8%	coding (303/723 nt)	rph	ribonuclease PH
	?	NC_002947	= 6041691	71 (1.450)					coding (233/723 nt)	rph	ribonuclease PH

GGCCGCCGCGCTTCTTGATCACTGCCAAAGCGTCGCACAAGGCAACCATGGCGCCGGTGATGGACGCGGTACGGGTACCGCCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6041473‑6041621 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcgAAGCCAGCCGTGGCAAGCAGGGTGGCCGCACCCTGGAAATCCAGCGCCTGATCGGCCGTTCGCTGCGCGCCGCGCTGGACATGAGCAAGCTCGGTGACATCACCCTGTACGTCGATTGCGACGTGATCCAGGCCGATGGCGG  <  NC_002947/6041691‑6041550                                                                                                                                                                                                                                                                                                     GGCCGCCGCGCTTCTTGATCACTGCCAAAGCGTCGCACAAGGCAACCATGGCGCCGGTGATGGACGCGGTACGGGTACCGCCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCG                                                                                                                                                <  5:159993/149‑1                                               CATGGCGCCGGTGATGGACGCGGTACGGGTACCGCCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGAAGCCAGCCGTGGCAAGCAGGGTGGCCGCACCCTGGAAATCCAGCG                                                                                                  >  8:159049/1‑149                                                                                 CCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGAAGCCAGCCGTGGCAAGCAGGGTGGCCGCACCCTGGAAATCCAGCGCCTGATCGGCCGTTCGCTGCGCGCCGCGCTGGAC                                                                <  7:159049/149‑1                                                                                       GCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGAAGCCAGCCGTGGCAAGCAGGGTGGCCGCACCCTGGAAATCCAGCGCCTGATCGGCCGTTCGCTGCGCGCCGCGCTGGACAT                                                              <  5:56918/145‑1                                                                                       GCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGAAGCCAGCCGTGGCAAGCAGGGTGGCCGCACCCTGGAAATCCAGCGCCTGATCGGCCGTTCGCTGCGCGCCGCGCTGGACAT                                                              >  6:56918/1‑145                                                                                                                                              CCAGCGCGAAGCCAGCCGTGGCAAGCAGGGTGGCCGCACCCTGGAAATCCAGCGCCTGATCGGCCGTTCGCTGCGCGCCGCGCTGGACATGAGCAAGCTCGGTGACATCACCCTGTACGTCGATTGCGACGTGATCCAGGCCGATGGCG   <  5:107758/149‑1                                                                                                                                                AGCGCGAAGCCAGCCGTGGCAAGCAGGGTGGCCGCACCCTGGAAATCCAGCGCCTGATCGGCCGTTCGCTGCGCGCCGCGCTGGACATGAGCAAGCTCGGTGACATCACCCTGTACGTCGATTGCGACGTGATCCAGGCCGATGGCGG  >  1:90083/1‑148                                                                                                                                                                                                                                                                                                     GGCCGCCGCGCTTCTTGATCACTGCCAAAGCGTCGCACAAGGCAACCATGGCGCCGGTGATGGACGCGGTACGGGTACCGCCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6041473‑6041621 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcgAAGCCAGCCGTGGCAAGCAGGGTGGCCGCACCCTGGAAATCCAGCGCCTGATCGGCCGTTCGCTGCGCGCCGCGCTGGACATGAGCAAGCTCGGTGACATCACCCTGTACGTCGATTGCGACGTGATCCAGGCCGATGGCGG  <  NC_002947/6041691‑6041550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.