New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6122373 =	51 (0.980)	7 (0.140)	4/258	NT	12.7%	coding (1235/1446 nt)	PP_5372	aldehyde dehydrogenase
	?	NC_002947	6122402 =	47 (0.930)					coding (1206/1446 nt)	PP_5372	aldehyde dehydrogenase

ATTACATGGCGCCAACCGTATTGCGCGATGTGACTGCGCAGATGGAGATAGCCCAGACTGAAGTCTTCGGCCCTGTGCTGGCAGTAATTCCCTTCGACAGCGAAGAGGAGGCCCTCGCCATTGCCAACGGCACCGTGTTCGGTCTGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6122523‑6122373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCTGCGCAGTCACATCGCGCAATACGGTTGGCGCCATGTAATGCCCGCTCAGGCCGCTGATGGCCTC  >  NC_002947/6122402‑6122548                                                                                                                                                                                                                                                                                                             ATTAAATTGCGCCAACCGTATTGCGCGATGTGACTGCGCAGATGGAGATATCCCAGACTGAACTCTTCGGCCCTGTGCTGGCAGTAATTCCCTTCGACAGCGAAGAGGAGGCCCTCGCCATTGCCAACGGCACTGTGTTCGGTCTGGTG                                                                                                                                                        <  4:70785/149‑1                                                                                                                   TCGCCATTGCCAACGGCACCGTGTTCGGTCTGGTGGCAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCTGCGCAGTCACATCGCGCAATACGGTTGGC                                     >  8:215429/1‑149                                                                                                                   TCGCCATTGCCAACGGCACCGTGTTCGGTCTGGTGGCAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCTGCGCAGTCACATCGCGCAATACGGTTGGC                                     >  8:55556/1‑149                                                                                                                       CATTGCCAACGGCACCGTGTTCGGTCTGGTGGCAATTGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCTGCGCAGTCACATCGCGCAATACGGTTGGCGC                                   >  1:52908/1‑148                                                                                                                       CATTGCCAACGGCACCGTGTTCGGTCTGGTGGCAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCTGCGCAGTCACATCGCGCAATACGGTTGGCGCCA                                 >  2:164095/1‑149                                                                                                                       CATTGCCAACGGCACCGTGTTCGGTCTGGTGGCAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCT                                                                  >  5:325020/1‑116                                                                                                                       CATTGCCAACGGCACCGTGTTCGGTCTGGTGGCAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCT                                                                  <  6:325020/116‑1                                                                                                                                        TGTTCGGTCTGGTGGCAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCTGCGCAGTCACATCGCGCAATACGGTTGGCGCCATGTAATGCCCGCTCAGG                <  7:215429/149‑1                                                                                                                                                      GCAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCTGCGCAGTCACATCGCGCAATACGGTTGGCGCCATGTAATGCCCGCTCAGGCCGCTGATGGCCTC  >  6:152979/1‑149                                                                                                                                                      GCAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCTGCGCAGTCACATCGCGCAATACGGTTGGCGCCATGTAATGCCCGCTCAGGCCGCTGATGGCCTC  <  7:118125/149‑1                                                                                                                                                                                                                                                                                                             ATTACATGGCGCCAACCGTATTGCGCGATGTGACTGCGCAGATGGAGATAGCCCAGACTGAAGTCTTCGGCCCTGTGCTGGCAGTAATTCCCTTCGACAGCGAAGAGGAGGCCCTCGCCATTGCCAACGGCACCGTGTTCGGTCTGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6122523‑6122373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcAA‑TGGCGAGGGCCTCCTCTTCGCTGTCGAAGGGAATTACTGCCAGCACAGGGCCGAAGACTTCAGTCTGGGCTATCTCCATCTGCGCAGTCACATCGCGCAATACGGTTGGCGCCATGTAATGCCCGCTCAGGCCGCTGATGGCCTC  >  NC_002947/6122402‑6122548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.