New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4390817 =	33 (0.630)	5 (0.100)	5/254	NT	12.3%	coding (108/192 nt)	PP_5640	hypothetical protein
	?	NC_002947	4390856 =	40 (0.800)					coding (69/192 nt)	PP_5640	hypothetical protein

ACGCCCGCCAAGGTCGGCGAAAGCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGACC  >  NC_002947/4390670‑4390963                                                                                                                                                    |                                                                                                                                                   taaatacatcgcggtctgcgccgccatcccgacctcgtcggtcaaccagctggacctggcggacctgaacaacgccgcgtggacggtcgccggttttttcttggcgccggcatcagcgacgttgacggcctgatcgccacggcttacGa                                                                                                                                                   <  5:92351‑M1/2‑1 (MQ=255)     tacatcgcggtctgcgccgccatcccgacctcgtcggtcaaccagctggacctggcggacctgaacaacgccgcgtggacggtcgccggttttttcttggcgccggcatcagcgacgttgacggcctgatcgccacggcttacGACCTg                                                                                                                                               <  2:61475‑M1/6‑1 (MQ=255)             gTCGGCGAAAGCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGt                                                                                                                                       <  2:26695/149‑1 (MQ=255)                    aaaGCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACtt                                                                                                                                >  1:19804/1‑149 (MQ=255)                    aaaGCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACtt                                                                                                                                <  6:177093/149‑1 (MQ=255)                     aaGCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTc                                                                                                                               <  5:322740/149‑1 (MQ=255)                     aaGCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTc                                                                                                                               <  2:18523/149‑1 (MQ=255)                     aaGCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTc                                                                                                                               <  2:45668/149‑1 (MQ=255)                      aGCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTcc                                                                                                                              <  5:267217/149‑1 (MQ=255)                       gCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCa                                                                                                                             <  2:224431/149‑1 (MQ=255)                         catcccgacctcgtcggtcaaccagctggacctggcggacctgaacaacgccgcgtggacggtcgccggttttttcttggcgccggcatcagcgacgttgacggcctgatcgccacggcccatGACCTGCTCCGGGTCTGACTTCCAg                                                                                                                            <  5:325758‑M1/25‑1 (MQ=255)                                     gTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCt                                                                                                                                     >  8:119973/1‑127 (MQ=255)                                     gTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCt                                                                                                                                     <  7:119973/127‑1 (MQ=255)                                     gTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGAGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGt                                                                                                               >  6:156777/1‑149 (MQ=255)                                        ggtcaaccagctggacctggcggacctgaacaacgccgcgtggacggtcgccggttttttcttggcgccggcatcagcgacgttgacggcctgatcgccacggcttacGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGt                                                                                                            >  8:66208‑M1/109‑149 (MQ=255)                                          tcaaccagctggacctggcggacctgaacaacgccgcgtggacggtcgccggttttttcttggcgccggcatcagcgacgttgacggcctgatcgccacggcttacTACCTGCTCCTGGTCTGACTTCCAGAACCAGGCCAGGTCGTaa                                                                                                          >  5:108339‑M1/107‑149 (MQ=255)                                           aGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAg                                                                                                         >  7:68607/1‑149 (MQ=255)                                            aaccagctggacctggcggacctgaacaacgccgcgtggacggtcgccggttttttcttggcgccggcatcagcgacgttgacggcctgatcgccacggcccatGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAg                                                                                                         >  6:325758‑M1/105‑148 (MQ=255)                                                gctggacctggcggacctgaacaacgccgcgtggacggtcgccggttttttcttggcgccggcatcagcgacgttgacggcctgatcgccacggctttccGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTg                                                                                                    >  1:81294‑M1/101‑149 (MQ=255)                                                   gAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGGGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTgg                                                                                                   <  3:85497/147‑1 (MQ=255)                                                   gAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTGTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATACTCACGTCCCGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGACCCCGGCCAGGTCGTAAGCCGTgg                                                                                                   <  3:271603/147‑1 (MQ=255)                                                      cTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGAt                                                                                               >  6:144831/1‑148 (MQ=255)                                                        gAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCACTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAg                                                                                            >  1:61475/1‑149 (MQ=255)                                                                    ccATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTACGGGTCTGACTTCCAGCACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTc                                                                                >  4:213021/1‑149 (MQ=255)                                                                     cATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGTCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCg                                                                               <  3:234417/149‑1 (MQ=255)                                                                     cATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTct                                                                               >  4:163294/1‑148 (MQ=255)                                                                      aTCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGc                                                                              <  8:68607/149‑1 (MQ=255)                                                                         ctccCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGa                                                                           >  2:28529/1‑149 (MQ=255)                                                                                           cgcgATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGaaaa                                                          >  3:195901/1‑148 (MQ=255)                                                                                              gATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCATCGTCGCTGATGCCGGCGCCAAGAAAAAAcc                                                      <  1:28529/149‑1 (MQ=255)                                                                                                       gCTCTGCGCGGTGGCTTCCATAATCCCGTCCAGGGTTCGGGCCATGCCCTGCTCCGGGTCTGACTTCCAGCACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGAcc                                               <  3:203721/147‑1 (MQ=255)                                                                                                                       tCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCACCGTCGGTGATGCCGGCGCCAAGAAAAACCCGGCGACCGTCCACGCGGCGTGGTTc                             >  2:321869/1‑149 (MQ=255)                                                                                                                         cATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCTGCGTTGTTCAg                           <  6:297571/149‑1 (MQ=255)                                                                                                                              tCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCg                      >  3:198224/1‑149 (MQ=255)                                                                                                                              tCACGTCCAGGGTGAGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCg                      >  5:31099/1‑149 (MQ=255)                                                                                                                               cACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGCCCGTCCACGCGGCGTTGTTCAGGTCCGc                     >  8:92956/1‑149 (MQ=255)                                                                                                                                aCGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGcc                    <  5:144831/149‑1 (MQ=255)                                                                                                                                  gTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGCCAg                  <  2:19804/149‑1 (MQ=255)                                                                                                                                          tGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGCCAGGTCCAGCt          >  5:151250/1‑149 (MQ=255)                                                                                                                                            cGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGCCAGGTCCAGCTg         <  4:195901/148‑1 (MQ=255)                                                                                                                                               cccATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGCCAGGTCCAg            <  7:7084/142‑1 (MQ=255)                                                                                                                                               cccATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGCCAGGTCCAg            >  8:7084/1‑142 (MQ=255)                                                                                                                                                ccATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGa    <  5:156777/149‑1 (MQ=255)                                                                                                                                                  aTGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGAcc  >  2:126138/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ACGCCCGCCAAGGTCGGCGAAAGCTTGTCGACGCCGGTGATCAGCGCCTTGAGCTGAAACTTGTCAGCCATCCTCCCCCCTCAGCGTTTCCGCGATGCGCTGGCTCTGCGCGGTGGCTTCCATAATCACGTCCAGGGTGCGGCCCATGACCTGCTCCGGGTCTGACTTCCAGAACCAGGCCAGGTCGTAAGCCGTGGCGATCAGGCCGTCAACGTCGCTGATGCCGGCGCCAAGAAAAAACCGGCGACCGTCCACGCGGCGTTGTTCAGGTCCGCCAGGTCCAGCTGGTTGACC  >  NC_002947/4390670‑4390963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.