New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4787630 | 47 (0.900) | 3 (0.060) | 3/252 | NT | 5.7% | coding (6210/6525 nt) | pvdI | non‑ribosomal peptide synthetase |
? | NC_002947 | = 4787661 | 54 (1.100) | coding (6179/6525 nt) | pvdI | non‑ribosomal peptide synthetase |
GGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGTCGGTGCGCAACTGCGCCAGAAGCTCCT > NC_002947/4787482‑4787775 | gggCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGG < 2:278219‑M1/149‑1 (MQ=255) cgccAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCgg < 4:118811/149‑1 (MQ=255) agcagcGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTg > 2:114775/1‑149 (MQ=255) gcagcGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGc < 7:257849/149‑1 (MQ=255) gcGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCgg > 4:201023/1‑148 (MQ=255) cagccAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCTCAGTACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGAGGAACATAGCGCACC‑TGAAGCTGTGCCAGATCGGGTTGCg < 2:105545/135‑1 (MQ=255) caccCAGTTCAAAGAAGTTGTCTTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACATTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATAGGGTTGCGGCAGCGCCtt > 7:203400/1‑148 (MQ=255) cAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGTGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTccagc < 3:31480‑M2/149‑6 (MQ=255) aaaGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTTCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTccagct < 8:244401‑M2/149‑7 (MQ=255) aaaGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCg < 3:274591/141‑1 (MQ=255) aaaGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCg > 4:274591/1‑141 (MQ=255) agaagTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCAGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGaccgcaaggcgctgccgcaacccgatctggcccagcttc < 6:247936‑M1/149‑40 (MQ=255) gaagTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGaccgcaaggcgctgccgcaacccgatctggcccagctt > 7:40900‑M1/1‑109 (MQ=255) agTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGaccgcaaggcgctgccgcaacccgatctggcccagcttcagg < 8:40900‑M1/149‑43 (MQ=255) tcgtcCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCgg > 6:326221/1‑149 (MQ=255) tcgtcCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCg < 3:15344/148‑1 (MQ=255) cAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGTCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTc < 1:114775/148‑1 (MQ=255) aGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAg < 6:28087/149‑1 (MQ=255) ccTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGc > 3:170495/1‑149 (MQ=255) gATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCggg < 3:201023/147‑1 (MQ=255) gcAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCat < 7:188595/149‑1 (MQ=255) gcAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCa > 5:289208/1‑148 (MQ=255) cAGGACATCGGCCCAGATCGCTGCGACCTTGCGATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCa > 1:39206/1‑148 (MQ=255) cAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCgg > 5:319568/1‑140 (MQ=255) cAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCgg < 6:319568/140‑1 (MQ=255) aGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGc > 3:215201/1‑141 (MQ=255) aGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGc < 4:215201/141‑1 (MQ=255) gACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGa < 1:70036/149‑1 (MQ=255) aTCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGt > 3:192123/1‑149 (MQ=255) tCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTg < 3:144978/149‑1 (MQ=255) cGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCa > 3:35992/1‑120 (MQ=255) cGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCa < 4:35992/120‑1 (MQ=255) cGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAgg < 6:145787/122‑1 (MQ=255) cGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAgg > 5:145787/1‑122 (MQ=255) gCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTggg > 8:181316/1‑148 (MQ=255) cccAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGACGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTgg < 4:170495/146‑1 (MQ=255) cGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAg < 7:244401/149‑1 (MQ=255) gC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACCATGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATg > 1:222346/1‑140 (MQ=255) gC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATg < 2:222346/139‑1 (MQ=255) ggTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGgctgc > 4:31729/1‑149 (MQ=255) gTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGATGTGGGCAGGCACCATGTAGTCCGGCAGgctgct < 8:203400/149‑1 (MQ=255) gTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGgctgct > 8:105144/1‑149 (MQ=255) tCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCtgctgc > 6:255435/1‑148 (MQ=255) gCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCTGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCg > 1:94774/1‑147 (MQ=255) cTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAg > 1:35542/1‑149 (MQ=255) gTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGt < 4:115562/149‑1 (MQ=255) cggcACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGTCGGTgc < 6:289208/149‑1 (MQ=255) gcACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTc < 2:304499/68‑1 (MQ=255) gcACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTc > 1:304499/1‑68 (MQ=255) cacaTAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGACAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGTCGGTgcgc > 1:51873/1‑148 (MQ=255) acaTAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGACAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGTCGGTGCGCaa < 2:51873/149‑1 (MQ=255) cgcACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGTCGGTGCGCAACTgcgc < 5:326221/149‑1 (MQ=255) cc‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTccagcttcaggtgcgctatgtgccgccgtacagcgataccgaatgcaaggtcgcagcgatctgggccgatgtcctgcgcatcgagcaggtcgggctggacgacaact < 8:40900‑M2/149‑108 (MQ=255) cc‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTAAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGTCGGTGCGCAACTGCGCCAg > 3:78273/1‑148 (MQ=255) gAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTccagcttcaggtgcgctatgtgccgccgtacagcgatactgaatgcaaggtcgcagcgatctgggccgatgtcctgcgcatcgagcaggtcgggctggacgacaacttct < 6:247936‑M2/149‑111 (MQ=255) aaGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTccagcttcaggtgcgctatgtgccgccgtacagcgataccgaatgcaaggtcgcagcgatctgggccgatgtcctgcgcatcgagcaggtcgggctggacgacaacttc > 7:40900‑M2/1‑38 (MQ=255) aGCTGGaccgcaaggcgctgccgcaacccgatctggcccagcttcaggtgcgctatgtgccgccgtacagcgataccgaatgcaaggtcgaagcgatctgggccgatgtcctgcgcatcgagcaggtcgggctggacgacaacttcttt < 8:244401‑M1/149‑144 (MQ=255) gCTGGaccgcaaggcgctgccgcaacccgatctggcccagcttcaggtgcgctatgtgccgccgtacagcgataccgaatgcaaggtcacagcgatctgggccgatgtcctgcgcatcgagcaggtcgggctggacgacaacttctttg < 3:31480‑M1/149‑145 (MQ=255) cTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGTCGGTGCGCAACTGCGCCAGAAGCTCCt > 3:218776/1‑149 (MQ=255) cTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGTCGGTGCGCAACTGCGCCAGAAGCTCCt < 4:31480/149‑1 (MQ=255) | GGGCCTGGGCCGCCAGCAGCGAGTGACCACCCAGTTCAAAGAAGTTGTCGTCCAGCCCGACCTGCTCGATGCGCAGGACATCGGCCCAGATCGCTGCGACCTTGC‑ATTCGGTATCGCTGTACGGCGGCACATAGCGCACC‑TGAAGCTGGGCCAGATCGGGTTGCGGCAGCGCCTTGCGGTCCAGCTTGCCGTTCGGGCTCAGGGGCAGCTCGGGCAACCATATGAGGTGGGCAGGCACCATGTAGTCCGGCAGGCTGCTGCGAAGGTCGGTGCGCAACTGCGCCAGAAGCTCCT > NC_002947/4787482‑4787775 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |