| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5288394 = | 23 (0.440) | 3 (0.070) | 3/206 | NT | 18.9% | intergenic (‑75/+109) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
| ? | NC_002947 | 5288488 = | 8 (0.200) | intergenic (‑169/+15) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B | |||||
GGCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCC > NC_002947/5288248‑5288530 | ggCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATgg < 8:212351/147‑1 (MQ=255) agttcctgggcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTc > 2:136810‑M1/141‑149 (MQ=255) agttcctgggcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccCGCCTCTTc < 7:4707‑M1/9‑1 (MQ=255) ttcctgggcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgcctgcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTcgc > 7:210985‑M1/139‑149 (MQ=255) ttcctgggcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTcgc < 3:146028‑M1/11‑1 (MQ=255) ggAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTcgcg > 8:260933/1‑149 (MQ=255) gAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGc < 2:311898/149‑1 (MQ=255) catgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGc > 4:146028‑M1/131‑149 (MQ=255) gaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCg < 2:194459‑M1/22‑1 (MQ=255) cggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTc > 6:46245‑M1/125‑149 (MQ=255) cggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTc > 5:65803‑M1/125‑149 (MQ=255) cAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTc < 7:260933/149‑1 (MQ=255) cctgccgaccttcctggctgtggatgtgatgcagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTCCca > 7:162128‑M1/122‑149 (MQ=255) cctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCAAgcccgcgaaga > 2:102383‑M1/122‑144 (MQ=255) gATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCAAGCCCGcgaagag < 8:44338/148‑7 (MQ=255) aTGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCcac > 2:167999/1‑147 (MQ=255) aTGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACaa < 2:232255/149‑1 (MQ=255) aTGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACaa < 8:123801/149‑1 (MQ=255) aCGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGt < 8:231053/148‑1 (MQ=255) gCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTg > 1:179100/1‑149 (MQ=255) gacgaATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTcc > 6:98734/1‑136 (MQ=255) gacgaATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTcc < 5:98734/136‑1 (MQ=255) ccTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCtt < 6:319976/149‑1 (MQ=255) ccTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCtt < 6:289606/149‑1 (MQ=255) ttcttcGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTGGCGGGCATTCCCGCCACCCCAACTACAGCAAAGTACATGAAAc > 4:142915/1‑147 (MQ=255) aTCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATa > 6:168277/1‑149 (MQ=255) ttttCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtg < 1:167999/149‑1 (MQ=255) ttttCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtg < 5:168277/149‑1 (MQ=255) cacaTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAg > 8:128936/1‑149 (MQ=255) acaTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGc < 2:275593/149‑1 (MQ=255) ccggcggcgttggcagcttatgaggcccatctggacaaggtgttttgcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGc > 7:276212‑M1/76‑148 (MQ=255) ccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTTCTTGAAACCTGCGTAATACCTGTGGGAGCg > 1:194459‑M1/76‑149 (MQ=255) tCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCggg < 7:128936/149‑1 (MQ=255) ggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccCGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCggg > 8:4707‑M1/74‑149 (MQ=255) gggCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCaa < 2:179100/149‑1 (MQ=255) gggCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCaa < 2:105530/149‑1 (MQ=255) ggcgCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGAACTCCAACGGCCTTGAAACCGGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGTCATAAAATTACTGTGCCTTGCCAAACACCTTGTcc < 4:221544/149‑1 (MQ=38) | GGCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCC > NC_002947/5288248‑5288530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |