New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477130	13 (0.250)	4 (0.110)	4/184	NT	24.3%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477147	16 (0.450)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein

GCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGG  >  NC_002947/5476988‑5477275                                                                                                                                               |                                                                                                                                                   gCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACgg                                                                                                                                               >  7:103191/1‑148 (MQ=255)  cTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGa                                                                                                                                             <  8:162282/149‑1 (MQ=255)     cGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGAta                                                                                                                                           <  2:227925/148‑2 (MQ=255)     cGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATcg                                                                                                                                          <  1:178384/149‑1 (MQ=255)                 cTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtag                                                                                                                              >  8:103191‑M2/1‑144 (MQ=255)                  tGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCAc                                                                                                                                                 <  5:178008/129‑1 (MQ=255)                  tGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCAc                                                                                                                                                 >  6:178008/1‑129 (MQ=255)                       ttGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcg                                                                                                                         <  2:202542‑M1/148‑28 (MQ=255)                       ttGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgg                                                                                                                        >  5:3454‑M2/1‑138 (MQ=255)                         gCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcggg                                                                                                                       >  7:264944‑M2/1‑136 (MQ=255)                         gCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcggg                                                                                                                       >  6:241132‑M2/1‑136 (MQ=255)                          ccGGCATGCGTGGCGGTGCTGGCGTTCTTCGCAATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggt                                                                                                                      >  7:217980‑M2/1‑135 (MQ=255)                          ccGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggt                                                                                                                      >  7:43622‑M2/1‑135 (MQ=255)                            ggCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggttta                                                                                                                   <  3:270633‑M1/149‑34 (MQ=255)                             gCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttac                                                                                                                  >  2:301691‑M2/1‑132 (MQ=255)                                  cGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgc                                                                                                              >  4:116474‑M2/1‑127 (MQ=255)                                  cGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgc                                                                                                              <  5:151498‑M2/148‑22 (MQ=255)                                    tGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaa                                                                                                           >  6:151498‑M2/1‑125 (MQ=255)                                     ggCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaat                                                                                                          >  4:115878‑M2/1‑124 (MQ=255)                                            ctgGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGGTGGGCCGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGAAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccg                                                                                                    >  7:117196‑M2/1‑117 (MQ=255)                                                                         gCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcggg                                                                                                                       >  8:93362‑M1/1‑71 (MQ=255)                                                                         gCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcggg                                                                                                                       <  7:93362‑M1/100‑30 (MQ=255)                                                                                ttGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaatag                                                                                                        >  6:311009‑M2/1‑81 (MQ=255)                                                                                                                 cGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggttttcccgcgaataggccggcacaggcaacatcaatattgataccggcccaccgcctgcggcaacgcatgcatggcgaagaacgccag                               >  7:117196‑M1/1‑31 (MQ=255)                                                                                                                  ggCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCGTGCGAATAGGCCGGCACAGGCAATACAGCACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGc                             >  1:261024/1‑149 (MQ=255)                                                                                                                  ggCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGAt                                  <  8:156454/143‑1 (MQ=255)                                                                                                                  ggCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGAt                                  >  7:156454/1‑143 (MQ=255)                                                                                                                  ggCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCACCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGcc                            >  4:167732/1‑149 (MQ=255)                                                                                                                     cTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaa                                                                   >  6:311009‑M1/1‑27 (MQ=255)                                                                                                                      tATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACt                                                                 <  1:137352/108‑1 (MQ=255)                                                                                                                      tATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACt                                                                 >  2:137352/1‑108 (MQ=255)                                                                                                                       aTTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgcc                        >  4:115878‑M1/1‑25 (MQ=255)                                                                                                                        ttCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgcca                       >  6:151498‑M1/1‑24 (MQ=255)                                                                                                                           gcgGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacg                     <  5:151498‑M1/148‑128 (MQ=255)                                                                                                                           gcgGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacg                     >  4:116474‑M1/1‑21 (MQ=255)                                                                                                                               gTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgc                >  2:301691‑M1/1‑17 (MQ=255)                                                                                                                                tAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgcc               <  3:270633‑M2/149‑117 (MQ=255)                                                                                                                                   aCCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcattgcgaagaacgccagcaccgccacgcatgccgg             >  7:217980‑M1/1‑13 (MQ=255)                                                                                                                                   aCCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccgg             >  7:43622‑M1/1‑13 (MQ=255)                                                                                                                                    cccGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggc            >  6:241132‑M1/1‑12 (MQ=255)                                                                                                                                    cccGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggc            >  7:264944‑M1/1‑12 (MQ=255)                                                                                                                                    cccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgc                                                            >  8:93362‑M2/1‑29 (MQ=255)                                                                                                                                    cccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgc                                                            <  7:93362‑M2/100‑72 (MQ=255)                                                                                                                                     ccGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaa          >  5:3454‑M1/1‑11 (MQ=255)                                                                                                                                     ccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGaa         >  1:91418/1‑149 (MQ=255)                                                                                                                                     ccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGaa         >  5:305331/1‑149 (MQ=255)                                                                                                                                     ccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGaa         >  6:99870/1‑149 (MQ=255)                                                                                                                                      cGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaa          <  2:202542‑M2/148‑122 (MQ=255)                                                                                                                                         tCCTACGCACGGGAACGCGCTTATCGAAGGAGCGGGTTTACC‑CGCGAATACGCCGCCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCAGTGGCGAATc       >  8:265919/1‑147 (MQ=255)                                                                                                                                           cTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaacaccag    >  8:103191‑M1/1‑5 (MQ=255)                                                                                                                                            tACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAggg  >  2:35978/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                   GCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACC‑CGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGG  >  NC_002947/5476988‑5477275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.