| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 5,681,415 | +CGGG | 100% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5681415 | 1 (0.020) | 39 (0.770) +CGGG |
33/258 | NT | 97.6% | intergenic (‑133/+71) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| ? | NC_002947 | 5681416 = | 1 (0.020) | intergenic (‑134/+70) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein | |||||
CGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGC > NC_002947/5681273‑5681555 | cGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggc < 7:72776‑M1/149‑7 (MQ=255)cGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTAATTGCCACTGCATGAACC‑‑‑‑GCcggggc > 5:144057‑M1/1‑143 (MQ=255)cGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGAGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggc > 8:206221‑M1/1‑143 (MQ=255) aTACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGCGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgc < 7:206221‑M1/148‑10 (MQ=255) aCATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgc > 5:208330‑M1/1‑137 (MQ=255) cATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcg > 8:232427‑M1/1‑136 (MQ=255) gCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcag > 8:288069‑M1/1‑133 (MQ=255) aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagcc < 7:232427‑M1/149‑19 (MQ=255) acaGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctat > 3:243084‑M1/1‑127 (MQ=255) caGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatc < 6:208330‑M1/149‑24 (MQ=255) ctcctGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccccatcgcgac < 7:288069‑M1/149‑29 (MQ=255) atgtgGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaagg < 6:259504‑M1/147‑35 (MQ=255) tGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTAATTGCCACTGCATGAACC‑‑‑‑GCcggggctgcagcgcaccccaatagcgcaacaaggccgctccc > 6:240160‑M1/1‑107 (MQ=255) ggTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagcc < 4:153072‑M1/123‑19 (MQ=255) ggTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagcc > 3:153072‑M1/1‑105 (MQ=255) ccTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactc > 7:247875‑M1/1‑101 (MQ=255) gttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagac > 7:97998‑M1/1‑98 (MQ=255) cTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaagg < 1:139334‑M1/116‑35 (MQ=255) ttCGTTTTTTGGGGGAGGGGCCTTGTGTCGCGAATGGGGCGCTAAGCGGCCCCTGGCTTTCATTGCCACTGCATCAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccacca < 8:233746‑M1/137‑57 (MQ=255) ttCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgccgccctatcgcgccccaaggccgctcccactcccgaccacccggccctgggcct > 7:91052‑M1/1‑81 (MQ=255) ttCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgccgccctatcgcgacacaaggccgctcccactccagaccacca > 7:233746‑M1/1‑81 (MQ=255) ttCTTTGTGGGAGCGGCCTTGTGTCGCTAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgccacaaaaggccgctcccactccagaccaccaggccctgcgcctcaca < 8:251321‑M1/149‑73 (MQ=255) ttCTTTGTGGGAGCGGCCTTGTGTAGCGAAAGGGGCGCGAACCGGCCCCCGGCGTTCATTGCCCCAGCATGAACCCCCGGGGCGGCTGCGCACGCCAATCCCGCCACAAGGCAGCGCCCACTCCCGCCCCCCCCGCCCGGCGccgcca > 8:227400/1‑144 (MQ=12) cTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcagg > 2:77383‑M1/1‑60 (MQ=255) gtCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaag < 7:240545‑M1/138‑84 (MQ=255) gtCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaag > 8:240545‑M1/1‑55 (MQ=255) gAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatcc > 6:229211‑M1/1‑50 (MQ=255) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgc < 8:247875‑M1/149‑102 (MQ=255) ggggCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgt > 8:174429‑M1/1‑46 (MQ=255) gAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcacgttgcagatccgcgtcacgcac > 3:57302‑M1/1‑39 (MQ=255) ccAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttc > 5:277223‑M1/1‑30 (MQ=255) cAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagacccccaggccctgcgcctcaaatcctaaccaaggtcaggttgcagatccgcgtcccgccccagcctttc > 3:44006‑M1/1‑29 (MQ=255) gCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaat < 7:174429‑M1/149‑124 (MQ=255) gCTTTCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgaaacatggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaat < 4:243084‑M1/149‑124 (MQ=255) tttCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagacctccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtc > 2:244927‑M1/1‑24 (MQ=255) tttCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagacctccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtc < 1:244927‑M1/128‑105 (MQ=255) tttCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgcggcgcagccctatcgcggcacaaggccgctcccactccacaccaccaggcccggcgcctcacatcctaaccaaggtaagggtgcagatccgcgtcacgccccagccgttccaaagc > 3:189911‑M1/1‑24 (MQ=255) tCATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgc < 5:229211‑M1/147‑126 (MQ=255) cATTGCCACTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcga < 6:277223‑M1/148‑128 (MQ=255) aCTGCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgaccaggtcc > 1:6662‑M1/1‑14 (MQ=255) gCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgaccaggtccgg > 6:112521‑M1/1‑11 (MQ=255) gCATGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgaccaggtccgg < 5:112521‑M1/148‑138 (MQ=255) cATGAACC‑‑‑‑GCcggggctgctgcgcagccctagcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgaccaggtccgg < 5:240160‑M1/147‑138 (MQ=255) aTGAACC‑‑‑‑GCcggggctgctgcgcagccctatcgcgacacaaggccgcacccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgaccaggtacggtac > 3:274673‑M1/1‑9 (MQ=255) | CGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGC > NC_002947/5681273‑5681555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |