New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	368835 =	55 (1.060)	3 (0.060)	3/256	NT	6.1%	intergenic (‑185/‑86)	PP_0307/PP_0308	hypothetical protein/dipeptidase
	?	NC_002947	368875 =	40 (0.800)					intergenic (‑225/‑46)	PP_0307/PP_0308	hypothetical protein/dipeptidase

TCGCAAATGTCGTTATCGAGACTGTCTCTCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGCCAAATGGAACCGCGAGCTGTTCGAAGACATGCGCAAAGGCGGCC  >  NC_002947/368728‑369020                                                                                                                                                      |                                                                                                                                                   tCGCAAATGTCGTTATCGAGACTGTCTCTCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCgg                                                                                                                                                   <  8:79683/149‑1 (MQ=255)  tttggcgatgatctggccatcgatgacgatgctgtcggcgtgtagttcggctgggctcatcaggctgtccccttttatagagttgggtcgcgcgaaaccttctggcGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCgg                                                                                                                                                   >  4:261538‑M1/107‑148 (MQ=255)     aaaTGTCGTTATCGAGACTGTCTCTCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCACAGCGCCGGCAg                                                                                                                                                >  3:216244/1‑148 (MQ=255)          tcctcaTCGCGACTGGCTCCCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGt                                                                                                                                           <  8:179919/143‑1 (MQ=255)               aTCGAGACTGTCTCTCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGgc                                                                                                                                      <  5:5962/148‑1 (MQ=255)                tCGAGACTGTCTCTCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGgcgc                                                                                                                                    >  4:298212/1‑149 (MQ=255)                  gagaCTGTCTCTCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGa                                                                                                                                  >  1:210743/1‑149 (MQ=255)                   agaCTGTCTCTCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGAc                                                                                                                                 >  2:288548/1‑149 (MQ=255)                   agaCTGGCTCTCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGAc                                                                                                                                 <  5:183691/149‑1 (MQ=255)                         tctctcATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCATTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAAct                                                                                                                           >  1:77474/1‑149 (MQ=255)                             tcATCCCCGGAACACGCGCCAGACGAGCTCTTGTCGCGCATTGACGCTATCGGCAAACCCCCTCTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGGTTGGCGGCACCCAACACta                                                                                                                        >  4:179380/1‑148 (MQ=255)                               aTCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCtat                                                                                                                       <  6:217288/147‑1 (MQ=255)                                  cccGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAg                                                                                                                  <  3:298212/149‑1 (MQ=255)                                   ccGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAgg                                                                                                                 <  8:199063/149‑1 (MQ=255)                                    cGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAggg                                                                                                                <  1:50947/149‑1 (MQ=255)                                    cGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAggg                                                                                                                <  1:25280/149‑1 (MQ=255)                                    cGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAggg                                                                                                                >  3:144276/1‑149 (MQ=255)                                    cGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAggg                                                                                                                <  1:288548/149‑1 (MQ=255)                                     ggAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAgggg                                                                                                               <  2:89059/149‑1 (MQ=255)                                      gAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGGCACGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAggg                                                                                                                <  1:97829/149‑1 (MQ=255)                                          acGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGc                                                                                                          >  2:117280/1‑149 (MQ=255)                                            gcgcCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑t                                                                                                       >  6:325766/1‑149 (MQ=255)                                               ccAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑tgat                                                                                                    <  6:290293/149‑1 (MQ=255)                                                     gcgcTCTTGTCGCGCATTGACGCTTTCGGCAAGCCGCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATATAAGGGGACAGcc                                                                                                         >  7:120060/1‑139 (MQ=255)                                                     gcgcTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTATGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGcc                                                                                                         <  8:120060/139‑1 (MQ=255)                                                        ctctTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGc                                                                                           <  6:177332/149‑1 (MQ=255)                                                             gTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGaa                                                                                       <  4:144276/148‑1 (MQ=255)                                                                  gcATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTacac                                                                                 >  2:106735/1‑149 (MQ=255)                                                                       gACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTa                                                                                    <  2:58258/141‑1 (MQ=255)                                                                       gACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTa                                                                                    <  2:53566/141‑1 (MQ=255)                                                                       gACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTa                                                                                    >  1:58258/1‑141 (MQ=255)                                                                       gACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTa                                                                                    >  1:53566/1‑141 (MQ=255)                                                                           cTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAg                                                                         >  3:305643/1‑148 (MQ=255)                                                                                ggCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCCTCGt                                                                   >  6:50883/1‑149 (MQ=255)                                                                                    aaCCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATc                                                               <  5:325766/149‑1 (MQ=255)                                                                                       ccccTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGAt                                                            <  2:77474/149‑1 (MQ=255)                                                                                        cccTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATg                                                           <  2:210743/149‑1 (MQ=255)                                                                                         ccTGTCGTTTTTTCACCGGGGCGCCGCGG‑‑GGCACATGGATATGCGGGCCTCAAAGCGCCGGCAGAAGGTTTTGCGCGACCCAACTCTATAAAAGGGGACAGCCTTGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATg                                                           <  1:66530/149‑1 (MQ=255)                                                                                               gTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGTGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGa                                                     <  2:98716/148‑1 (MQ=255)                                                                                                    tGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAGAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGatcatc                                                <  6:210950/148‑1 (MQ=255)                                                                                                       aCCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGcc                                             >  3:288378/1‑148 (MQ=255)                                                                                                            ccggcgctttgaggccagcatatgcctgtgccccgaggcgccGCCAGAAGGTTTCGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCAGATCATCGCCaaa                                          >  4:261538‑M2/43‑148 (MQ=255)                                                                                                             GCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGCCAAATgg                                       <  8:3318‑M1/148‑1 (MQ=255)                                                                                                              ggcgctttgaggccagcatatgcctgtgccccgaggcgccGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGatcatc                                                >  7:171035‑M2/41‑140 (MQ=255)                                                                                                              ggcgctttgaggccagcatatgcctgtgccccgaggcgccGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGatcatc                                                <  8:171035‑M2/100‑1 (MQ=255)                                                                                                                  tCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGCCAAATGGAACcgc                                 >  2:97171/1‑149 (MQ=255)                                                                                                                   tgg‑‑ggCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGCCAAATGGAACcgcg                                <  1:117280/148‑1 (MQ=255)                                                                                                                                            tCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGCCAAATGGAACCGCGAGCTGTTCGAAGACATGCGCa           >  7:152199/1‑147 (MQ=255)                                                                                                                                              aaaGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGCCAAATGGAACCGCGAGCTGTTCGAAGACATGCGCaaa         <  5:327330/147‑1 (MQ=255)                                                                                                                                                  cgccGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGCCAAATGGAACCGCGAGCTGTTCGAAGACATGCGCAAAggcggc   <  1:106735‑M2/145‑1 (MQ=255)                                                                                                                                                   gccGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGCCAAATGGAACCGCGAGCTGTTCGAAGACATGCGCAAAGGCGGcc  >  2:215091‑M2/4‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                   TCGCAAATGTCGTTATCGAGACTGTCTCTCATCCCCGGAACACGCGCCAGACGCGCTCTTGTCGCGCATTGACGCTTTCGGCAAACCCCCTGTCGTTTTTGCACCGGGGCGCCTCGG‑‑GGCACAGGCATATGCTGGCCTCAAAGCGCCGGCAGAAGGTTTGGCGCGACCCAACTCTATAAAAGGGGACAGCC‑TGATGAGCCCAGCCGAACTACACGCCGACAGCATCGTCATCGATGGCCTGATCATCGCCAAATGGAACCGCGAGCTGTTCGAAGACATGCGCAAAGGCGGCC  >  NC_002947/368728‑369020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.