New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 890890 | 51 (0.980) | 3 (0.060) | 3/252 | NT | 5.6% | coding (54/711 nt) | yiaD | OmpA/MotB domain‑containing protein |
? | NC_002947 | = 890919 | 53 (1.080) | coding (83/711 nt) | yiaD | OmpA/MotB domain‑containing protein |
CATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGTGCTGCCGCTGCA > NC_002947/890775‑891067 | cATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAggcg < 2:53136‑M2/149‑5 (MQ=255) gAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAggcgcag > 5:251963‑M2/1‑141 (MQ=255) gAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAgg > 3:312514/1‑149 (MQ=255) cTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCca > 4:40060/1‑149 (MQ=255) ggATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGTAGGGCTCCACAgg > 4:186156/1‑149 (MQ=255) ggATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAg < 3:47302/148‑1 (MQ=255) gATCTGCCGCATTTATGAAATTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAggg < 1:254712/149‑1 (MQ=255) tGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGAt > 5:187951/1‑147 (MQ=255) ccGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGAt < 6:253626/145‑1 (MQ=255) gCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCaa < 7:165817/149‑1 (MQ=255) tATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGTAGGGCTCCACAGGGATGAGCAAGACt < 3:186156/148‑1 (MQ=255) tATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACt < 4:312514/148‑1 (MQ=255) ggAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCaa < 5:1304/130‑1 (MQ=255) ggAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCaa > 6:1304/1‑130 (MQ=255) gAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGtt > 5:134659/1‑149 (MQ=255) ccATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGgcgcg > 5:128214/1‑149 (MQ=255) cATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGgcgcg < 1:53136/148‑1 (MQ=255) gTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTgg > 5:203531/1‑149 (MQ=255) gTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTgg > 1:14062/1‑149 (MQ=255) aCCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGTGCTGGCCgg > 2:73430/1‑149 (MQ=255) aCCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCg < 6:326339/148‑1 (MQ=255) aTTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGt < 3:40060/147‑1 (MQ=255) aTTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGt < 4:79018/147‑1 (MQ=255) tATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTgccg > 7:107607/1‑149 (MQ=255) aTCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTgccg < 5:19149/148‑1 (MQ=255) aTCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTgccg < 6:203531/148‑1 (MQ=255) gtcgCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCa < 6:134659/148‑1 (MQ=255) tcgCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGttt < 3:86024/112‑1 (MQ=255) tcgCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGttt > 4:86024/1‑112 (MQ=255) gCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGa < 5:97199/149‑1 (MQ=255) gccgcTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCacaa > 1:100629/1‑149 (MQ=255) gccgcTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCacaa < 8:104641/149‑1 (MQ=255) gcTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCCTCGCGGGTGCCGCCATCGAGCAcaacaa > 4:50367/1‑149 (MQ=255) cACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGt > 6:285607/1‑149 (MQ=255) aCTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTg > 4:86187/1‑149 (MQ=255) tgatgaCCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTgg > 6:63473/1‑148 (MQ=255) atgaCCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTTCGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGc > 4:281007/1‑147 (MQ=255) atgaCCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACcac < 3:237031/135‑1 (MQ=255) atgaCCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACcac > 4:237031/1‑135 (MQ=255) aCCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAggg < 5:63473/149‑1 (MQ=255) aCCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAgg < 2:14062/148‑1 (MQ=255) ccGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAgggg > 5:214961/1‑149 (MQ=255) gCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAggcgcagccggtcatcagtgcagcggcggttgcgacgataatcagacgacgcatggtgaacatggacaagctccta < 7:94736‑M2/113‑77 (MQ=255) gCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAggcgcagccggtcatcagtgcagcggcggttgcgacgataatcagacgacgcatggtgaacatggacaagctccta > 8:94736‑M2/1‑37 (MQ=255) cTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAggcgcagccggtcatcagtgcagcggcggttgcgacgataatcagacgacgcatggtgaacatggacaagctcctactgaaattcataaatgcggcagatcccaaggggttc < 4:826‑M2/148‑113 (MQ=255) ccGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATc < 8:107607/149‑1 (MQ=255) cGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCg > 6:15354/1‑149 (MQ=255) ggCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCgg < 5:285607/149‑1 (MQ=255) cAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGc > 6:287342/1‑149 (MQ=255) cccTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCgcag > 2:254745/1‑149 (MQ=255) ttACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGcagcag > 5:237924/1‑149 (MQ=255) ttACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGcagcag > 2:19614/1‑149 (MQ=255) ttACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGcagcag > 5:17301/1‑149 (MQ=255) aCGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTg > 2:323697/1‑149 (MQ=255) cGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGTGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTgg < 1:73430/149‑1 (MQ=255) cGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTgg < 6:187951/149‑1 (MQ=255) aaCCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGtgc > 4:58077/1‑149 (MQ=255) aCCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACGGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGtgct > 5:276184/1‑149 (MQ=255) gggTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGTGCTGCCg < 5:287342/149‑1 (MQ=255) aGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGTGCTGCCGCTGCa < 1:254745/149‑1 (MQ=255) | CATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGTGCTGCCGCTGCA > NC_002947/890775‑891067 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |