New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1160522 =	31 (0.600)	3 (0.060)	3/258	NT	7.6%	coding (334/846 nt)	gtsC	mannose/glucose ABC transporter permease
	?	NC_002947	1160576 =	43 (0.850)					coding (388/846 nt)	gtsC	mannose/glucose ABC transporter permease

ACCGTGCCCGCGGTGCTGATCTCCACCGCGATTGGTGCACTGAACGGCTATGTGCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATCCCCGACGCGCTGGTCAAGGCCGCGCGG  >  NC_002947/1160429‑1160719                                                                                                                                                    |                                                                                                                                                 aCCGTGCCCGCGGTGCTGATCTCCACCGCGATTGGTGCACTGAACGGCTATGTGCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTc                                                                                                                                                 >  6:289847/1‑149 (MQ=255)  ccGTGCCCGCGGTGCTGATCTCCACCGCGATTGGTGCACTGAACGGCTATGTGCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCg                                                                                                                                                >  5:35031/1‑149 (MQ=255)  ccGTGCCCGCGGTGCTGATCTCCACCGCGATTGGTGCACTGAACGGCTATGTGCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCg                                                                                                                                                <  2:192168/149‑1 (MQ=255)          gcgGTGCTGATCTCCACCGCGATTGGTGCACTGAACGGCTATGTGCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCAcc                                                                                                                                          >  1:321131/1‑147 (MQ=255)          gcgGTGCTGATCTCCACCGCGATTGGTGCACTGAACGGCTATGTGCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCAcc                                                                                                                                          <  2:321131/147‑1 (MQ=255)                  gATCTCCACCGCGATTGGTGCACTGAACGGCTATGTGCTGACGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGACGTTCCAGACCGTGCTCCTGCCGGCCTCGTTCACCCTCGGCAAGc                                                                                                                                >  5:231771/1‑149 (MQ=255)                            gcgATTGGTGCAGTGAACGGCTATGTGCTGTCGATGTGGCGCTTGCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTtgg‑cctggc                                                                                                                     <  1:99271/149‑1 (MQ=255)                                     gCACTGAACGGCTATGTGCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCAc                                                                                                            >  2:75870/1‑149 (MQ=255)                                       aCTGAACGGCTATGTGCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACtg                                                                                                          >  7:185790/1‑149 (MQ=255)                                        cagcaccaggccaccagtggtactggccaggccaagcttgccgagggtgaacgaGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTc                                                                                                                                             <  8:102423‑M1/60‑1 (MQ=255)                                        cagcaccaggccaccagtggtactggccaggccaagcttgccgagggtgaacgaGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTc                                                                                                                                             >  7:102423‑M1/55‑114 (MQ=255)                                           atcGGCTATGTGCTGTCGATGTGGCGCTTACGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGTCGGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACtggtg                                                                                                       <  6:231771/146‑1 (MQ=255)                                              ggCTTTGTGCTGTCGATGTGGGGGTTCCGTGGTTCGGAACTGTTCTTCTGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGTCCGTGGTGCTGCCGGCCTCGTTCTCCCTCTGCTTGCTTGG‑CCTGGCCAGTACCAGTGGTGGCct                                                                                                   <  4:112940/149‑1 (MQ=255)                                                     tgCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCctggtgctg                                                                                            >  4:316748/1‑149 (MQ=255)                                                        tGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCctggtgctggtg                                                                                         >  4:137487/1‑149 (MQ=255)                                                              tgtgGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCAtgtg                                                                                   <  8:185790/149‑1 (MQ=255)                                                                tgGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGt                                                                                 <  5:294828/149‑1 (MQ=255)                                                                          gAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACggcctg                                                                       <  3:137487/149‑1 (MQ=255)                                                                              ttCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACggcctggcct                                                                   >  3:4052/1‑149 (MQ=255)                                                                                 gCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCAACCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTc                                                                 >  6:195295/1‑148 (MQ=255)                                                                                 gCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCAACCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTc                                                                 <  5:195295/148‑1 (MQ=255)                                                                                  cAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTcac                                                               <  3:316748/149‑1 (MQ=255)                                                                                        ttcttcGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACg                                                           <  5:323711/147‑1 (MQ=255)                                                                                        gaacgaggccggcagcagcacggtctggaacggcaggaaacagccgaacagcagcaggccTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCctggtgctg                                                                                            >  7:102423‑M2/61‑114 (MQ=255)                                                                                        gaacgaggccggcagcagcacggtctggaacggcaggaaacagccgaacagcagcaggccTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCctggtgctg                                                                                            <  8:102423‑M2/54‑1 (MQ=255)                                                                                         tcttcGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTg                                                        >  5:327698/1‑149 (MQ=255)                                                                                              ggccggcagcagcacggtctggaacggcaggaaacagccgaacagcagcaggccTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGttctt                                                   >  4:136687‑M2/55‑149 (MQ=255)                                                                                                          ttCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGc                                                          <  4:161286/130‑1 (MQ=255)                                                                                                          ttCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGc                                                          >  3:161286/1‑130 (MQ=255)                                                                                                          ttCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTa                                       >  6:80419/1‑149 (MQ=255)                                                                                                           tCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTAc                                      >  6:298535/1‑149 (MQ=255)                                                                                                             ggCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGt                                    >  2:198292/1‑149 (MQ=255)                                                                                                             ggCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGt                                    >  8:178211/1‑149 (MQ=255)                                                                                                                tGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTAc                                      <  6:226419/144‑1 (MQ=255)                                                                                                                tGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTAc                                      >  5:226419/1‑144 (MQ=255)                                                                                                                tGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAg                                 >  2:14186/1‑149 (MQ=255)                                                                                                                tGTTTCCTGACGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAg                                 >  4:267838/1‑149 (MQ=255)                                                                                                                 gTTTCCTGCCTTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGGAGCTGGCCAGTACCACTGGTGGCATGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGt                                    >  1:257298/1‑146 (MQ=255)                                                                                                                    tCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCAt                              <  3:85200/148‑1 (MQ=255)                                                                                                                      cTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGGTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATccc                           >  6:90216/1‑149 (MQ=255)                                                                                                                      cTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATccc                           <  5:80419/149‑1 (MQ=255)                                                                                                                      cTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATccc                           <  2:95409/149‑1 (MQ=255)                                                                                                                      cTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATccc                           >  1:95409/1‑149 (MQ=255)                                                                                                                      cTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATccc                           >  8:252156/1‑149 (MQ=255)                                                                                                                        gCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATcccc                          >  5:233523/1‑148 (MQ=255)                                                                                                                          cGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATCCCCGAc                       <  7:178211/149‑1 (MQ=255)                                                                                                                          cGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATCCCCGAc                       <  1:198292/149‑1 (MQ=255)                                                                                                                               cAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATCCCCGACGCGCt                  >  3:12643/1‑149 (MQ=255)                                                                                                                                    cGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCtt                                                                  >  4:131026/1‑96 (MQ=255)                                                                                                                                    cGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCtt                                                                  <  3:131026/96‑1 (MQ=255)                                                                                                                                         tgctgcCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATCCCCGACGCGCTGGTCAAGGcc        >  6:63022/1‑149 (MQ=255)                                                                                                                                           ctgcCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATCCCCGACGCGCTGGTCAAGGcc        <  4:4052/147‑1 (MQ=255)                                                                                                                                               cGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATCCCCGACGCGCTGGTCAAGGCCGCGCgg  <  5:298535/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 ACCGTGCCCGCGGTGCTGATCTCCACCGCGATTGGTGCACTGAACGGCTATGTGCTGTCGATGTGGCGCTTCCGAGGTTCGCAACTGTTCTTCGGCCTGCTGCTGTTCGGCTGTTTCCTGCCGTTCCAGACCGTGCTGCTGCCGGCCTCGTTCACCCTCGGCAAGCTTGG‑CCTGGCCAGTACCACTGGTGGCCTGGTGCTGGTGCATGTGGTCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTTCTACGTGAGCATCCCCGACGCGCTGGTCAAGGCCGCGCGG  >  NC_002947/1160429‑1160719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.