| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1419549 | 14 (0.270) | 15 (0.290) | 11/260 | NT | 45.0% | intergenic (‑38/+98) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1419636 | 23 (0.450) | intergenic (‑125/+11) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
TGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGT > NC_002947/1419525‑1419782 | tGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGGAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGGTAATGCAAGGTGTGa > 3:197136/1‑139 (MQ=255)tGGATGCTGGGTTGCCTGGGCGGGCCGCTTCGCGGGCACGCCCGCTCCCCCCGTTACTGTGCCGTGCGGGCCGGCTGGGGTGACCCTGTGGGAGCGGGCGTGCCCGCTAAGAGGCCTGACCTGCTAATGCAAGGTGTGa < 4:197136/139‑1 (MQ=25) aCGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGc > 8:60739/1‑138 (MQ=255) aCGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGc < 7:60739/138‑1 (MQ=255) gCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagcacccaccacagtcg < 4:41269‑M2/149‑76 (MQ=255) ccGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcgg < 8:195084‑M2/148‑77 (MQ=255) tCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaaca > 5:69959‑M2/1‑68 (MQ=255) tCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaaca < 6:69959‑M2/122‑55 (MQ=255) tCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGGGCCCGCGAAGAGgcctgcccaggcaacccagaatccagggaaccaaaaccaggcccacggacaacacaacagaacccgccacagtcggcaaga < 2:236102‑M2/149‑82 (MQ=255) cccACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgcctgaccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagac < 7:112327‑M2/149‑83 (MQ=255) ccACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCTCATCTGCAACTGCATCAACGCCGACTCGACCAGc > 8:78061/1‑149 (MQ=255) ccACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGc > 5:171322/1‑149 (MQ=255) acaGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCGGCGAAGAGGCCTGACCTGCTAATGCTAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAGCTGCATCAACGCCGACTCGACCAGccc > 2:101577/1‑149 (MQ=255) tgCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgcctgaccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaa > 8:112327‑M2/1‑54 (MQ=255) tgCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCt > 3:283321/1‑149 (MQ=255) tgCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCt > 5:149179/1‑149 (MQ=255) cAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCTAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTc > 3:158172/1‑149 (MQ=255) aCGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATg < 4:158172/149‑1 (MQ=255) gtcTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGAATCTGCAACTGCATCAACGCCGAGTCGACCAGCCCCTGTACCGCTTCCATTTCATGGa > 5:245518/3‑149 (MQ=255) ggCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCTTGGa > 1:312840/1‑149 (MQ=255) gcagtacctgtgggAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacc < 1:324996‑M2/143‑115 (MQ=255) cagtacctgtggGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcaccc < 5:314853‑M2/144‑116 (MQ=255) cTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacactcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgtt < 4:169610‑M2/149‑122 (MQ=255) cTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATc > 8:132377/1‑81 (MQ=255) cTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATc < 7:132377/81‑1 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttcc > 7:83525‑M2/1‑25 (MQ=255) gggAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccg < 5:213781‑M2/148‑125 (MQ=255) cttcgcgggCACGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccg < 7:164822‑M2/144‑125 (MQ=255) ggAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCa < 7:236652/134‑1 (MQ=255) ggAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCa > 8:236652/1‑134 (MQ=255) ggAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACg > 6:126627/1‑148 (MQ=255) ggAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGa > 6:243888/1‑149 (MQ=255) aGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatc > 2:149887‑M2/1‑21 (MQ=255) gCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCt > 3:7719/1‑149 (MQ=255) gCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCt > 2:19581/1‑149 (MQ=255) gTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCTTGGATCACGGCCTGCATCACGATCGAGCtgt < 2:312840/149‑1 (MQ=255) ccGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcat < 2:39725‑M2/149‑140 (MQ=255) cgcgAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGGGGGCg > 5:246405/1‑149 (MQ=255) gaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatcccctgc > 6:314853‑M2/1‑3 (MQ=255) | TGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGT > NC_002947/1419525‑1419782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |