New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3620164	48 (0.920)	3 (0.060)	3/254	NT	6.3%	coding (189/948 nt)	PP_3190	ornithine cyclodeaminase/mu‑crystallin family protein
	?	NC_002947	= 3620190	43 (0.870)					coding (163/948 nt)	PP_3190	ornithine cyclodeaminase/mu‑crystallin family protein

GGTCCTGCAGCAGTGCCAGCGGCTGACCGGTGTGTGCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCTGACCGCCAACTCCGGGTTGAAATGGGCGACGATCTGCGCC  >  NC_002947/3620043‑3620335                                                                                                                                                    |                                                                                                                                                   ggTCCTGCAGCAGTGCCAGCGGCTGACCGGTGTGTGCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGa                                                                                                                                                    <  2:105808/148‑1 (MQ=255) ggTCCTGCAGCAGTGCCAGCGGCTGACCGGTGTGTGCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGAc                                                                                                                                                   <  7:122557‑M2/149‑2 (MQ=255)    ccTGCAGCAGTGCCAGCGGCTGACCGGTGTGTGCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGActtc                                                                                                                                                >  7:24570‑M2/1‑145 (MQ=255)                ccAGCGGCTGACCGGTGTGTGCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCa                                                                                                                                    <  5:261367/149‑1 (MQ=255)                  aGCGGCTGACCGGTGTGTGCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCAcc                                                                                                                                  >  7:1091/1‑149 (MQ=255)                         gACCGGTGTGTGCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCAcc                                                                                                                                  <  6:186026/142‑1 (MQ=255)                         gACCGGTGTGTGCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCAcc                                                                                                                                  >  5:186026/1‑142 (MQ=255)                                  aagCAGACAACTCTAGCATCAAGCCTTCATTGCTCGGCAGGCGCTTGGACGGGTTGTCGTAGAAGCCTGTCTAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACACTCACCGTTCGCGCCCTTGAAt                                                                                                                  <  8:137433/147‑1 (MQ=255)                                   tgCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAAt                                                                                                                  <  4:77806/148‑1 (MQ=255)                                    gCACACAACACAAGCATCTAGCGATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCCTAGAAGCCTGTCGATATCTTCACGCTGTAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGatt                                                                                                                  >  7:137433/1‑145 (MQ=255)                                          aacaCAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGGAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGcc                                                                                                          >  7:82995/1‑149 (MQ=255)                                           acacAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGccc                                                                                                         >  5:222400/1‑149 (MQ=255)                                            cacaAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCt                                                                                                        <  8:305438/149‑1 (MQ=255)                                                 gCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCCGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACg                                                                                                   >  4:303519/1‑149 (MQ=255)                                                    tCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAATGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGggc                                                                                                <  5:161174/149‑1 (MQ=255)                                                    tCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGggc                                                                                                <  1:172286/149‑1 (MQ=255)                                                    tCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGggc                                                                                                <  1:167139/149‑1 (MQ=255)                                                          catcatTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGgcacc                                                                                          >  1:90280/1‑149 (MQ=255)                                                                  cTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGggc                                                                                                <  6:237389/135‑1 (MQ=255)                                                                  cTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGggc                                                                                                >  5:237389/1‑135 (MQ=255)                                                                   tCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTg                                                                                 >  3:232778/1‑149 (MQ=255)                                                                        aGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTc                                                                            <  2:90280/149‑1 (MQ=255)                                                                         ggCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCg                                                                           <  1:193892/149‑1 (MQ=255)                                                                         ggCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCg                                                                           <  4:232778/149‑1 (MQ=255)                                                                         ggCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCg                                                                           <  3:303519/149‑1 (MQ=255)                                                                          gCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCg                                                                           >  6:159075/1‑148 (MQ=255)                                                                                 gACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAgg                                                                    <  8:122557/148‑1 (MQ=255)                                                                                   cGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTAGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGa                                                                 >  5:30493/1‑149 (MQ=255)                                                                                       ttGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGaa                                                             <  6:222400/149‑1 (MQ=255)                                                                                              aGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCTCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATa                                                                      <  6:121238/133‑1 (MQ=255)                                                                                              aGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCTCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATa                                                                      >  5:121238/1‑133 (MQ=255)                                                                                               ggaGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTtcct                                                    <  8:82995/147‑1 (MQ=255)                                                                                               gAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTtcc                                                     <  5:159075/148‑1 (MQ=255)                                                                                                  gCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGgcacctgcac                                                                                     >  4:31382/1‑114 (MQ=255)                                                                                                  gCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGgcacctgcac                                                                                     <  3:31382/114‑1 (MQ=255)                                                                                                       tCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCTCCCTTGAATGCGAAGCGCTGCACGGGCGGCACCTGCACCTTGCCTTAGGAATAGGCGATGAAG‑CCTTCCTCCAGtt                                              <  4:33482/147‑1 (MQ=255)                                                                                                       tCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTgg                                            >  8:92326/1‑149 (MQ=255)                                                                                                        cGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTgg                                            <  5:164050/148‑1 (MQ=255)                                                                                                         gAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCt                                          >  1:327080/1‑149 (MQ=255)                                                                                                             gCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGCAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCTGAcc                                      <  7:95956/149‑1 (MQ=255)                                                                                                             gCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGAAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCTGAcc                                      >  8:95956/1‑149 (MQ=255)                                                                                                                    ggTGAAGGTCGGGCTGCCTTCGATGTAGGCCGActtcaccgtcaagctttcgacaggcttctacgacaacccgtccaagggcctgccgagcaatgatggcttgatgcttgtgttgtctgcacacaccggtcagccgctggcactgc                                   >  3:277285‑M2/1‑33 (MQ=255)                                                                                                                    ggTGAAGGTCGGGCTGCCTTCGATGTAGGCCGActtcaccgtcaagctttcgacaggcttctacgacaacccgtccaagggcctgccgagcaatgatggcttgatgcttgtgttgtctgcacacaccggtcagccgctggcactgc                                   <  4:277285‑M2/146‑114 (MQ=255)                                                                                                                     gTGAAGGTCGGGCTGCCTTCGATGTAGGCCGActtcaccgtcaagctttcgacaggcttctacgacaacccgtccaagggcctaccgagcaatgatggcttgatgcttgtgttgtctgcacacaccggtcagccgctggcactgctg                                 <  7:294030‑M2/147‑116 (MQ=255)                                                                                                                      tGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCGGGCAGCCAACtgg                             <  3:188592/149‑3 (MQ=255)                                                                                                                         aGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAGCCCTTCCTCCAGTTGGCTGACCGCCAACTCCgg                           <  1:34629/149‑1 (MQ=255)                                                                                                                          ggTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCAGACCGCCAACTCCGGGt                         >  6:251434/1‑149 (MQ=255)                                                                                                                                gCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCTGACCGCCAACTCCGGGTTGAAAt                   >  8:61244/1‑149 (MQ=255)                                                                                                                                    ccTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCTGACCGCCAACTCCGGGTTGAAATgg                 <  2:327080/147‑1 (MQ=255)                                                                                                                                                gCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCTGACCGCCAACTCCGGGTTGAAATGGGCGACGATCTgcgc   >  4:56584/1‑149 (MQ=255)                                                                                                                                                 ccGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCTGACCGCCAAGTCCGGGTTGAAATGGGCGACGATCTGCGcc  >  8:56884/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GGTCCTGCAGCAGTGCCAGCGGCTGACCGGTGTGTGCAGACAACACAAGCATCAAGCCATCATTGCTCGGCAGGCCCTTGGACGGGTTGTCGTAGAAGCCTGTCGAAAGCTTGACGGTGAAGGTCGGGCTGCCTTCGATGTAGGCCGACTTCACGCAACAGTCACCGTTCGCGCCCTTGAATGCGAAGCCCTGCACGGGCGGCACCTGCACCTTGCCTTCGGAATAGGCGATGAAG‑CCTTCCTCCAGTTGGCTGACCGCCAACTCCGGGTTGAAATGGGCGACGATCTGCGCC  >  NC_002947/3620043‑3620335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.