New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4094649	35 (0.670)	7 (0.150)	4/242	NT	17.8%	intergenic (+65/+70)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
	?	NC_002947	= 4094694	33 (0.700)					intergenic (+110/+25)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator

GTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCT  >  NC_002947/4094548‑4094834                                                                                                                                                   |                                                                                                                                             gTTGGTGAACGGTCAGTGGAGTGTCGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGag                                                                                                                                            >  6:244415‑M2/1‑147 (MQ=255)    ggTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggc                                                                                                                                          >  5:181342‑M2/1‑144 (MQ=255)     gTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggcca                                                                                                                                        >  6:242408‑M2/1‑143 (MQ=255)     gTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggc                                                                                                                                          <  6:91474‑M2/147‑5 (MQ=255)     gTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggc                                                                                                                                          <  2:167622‑M2/147‑5 (MQ=255)                   gAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGTCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCaaa                                                                                                                          <  7:225135/149‑1 (MQ=255)                       gACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCt                                                                                                                      >  3:206710/1‑149 (MQ=255)                          ggggCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCtt                                                                                                                     >  1:43335/1‑147 (MQ=255)                           gggCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAg                                                                                                                  <  5:132779/149‑1 (MQ=255)                           gggCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAg                                                                                                                  <  1:143930/149‑1 (MQ=255)                                  cTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGa                                                                                                                                             <  8:226770‑M2/115‑2 (MQ=255)                                  cTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGa                                                                                                                                             >  7:226770‑M2/1‑114 (MQ=255)                                     aCTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTcc                                                                                                             <  3:155160/144‑1 (MQ=255)                                      cTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTgcgc                                                                                                       <  1:167622/149‑1 (MQ=255)                                         gTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGTCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCtt                                                                                                     <  5:182240/148‑1 (MQ=255)                                         gTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCtt                                                                                                     >  7:290261/1‑148 (MQ=255)                                              cAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAgccg                                                                                               >  3:34451/1‑149 (MQ=255)                                                gAAACAGGAAAGCCCTGCGCACGGCGGGGC‑TCTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCt                                                                                            >  7:75928/1‑149 (MQ=255)                                                     aGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATg                                                                                        >  4:273946/1‑149 (MQ=255)                                                           gCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTg                                                                                  <  4:260472/149‑1 (MQ=255)                                                             ccTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGgc                                                                                <  3:273946/149‑1 (MQ=255)                                                                 cgcACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCaa                                                                            <  4:206710/149‑1 (MQ=255)                                                                            gCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGc                                                                 >  6:27669/1‑149 (MQ=255)                                                                                                 tGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgcccc                                                                 >  8:23814‑M2/1‑51 (MQ=255)                                                                                                 tGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcatgtttctggcaaccagtcagatcgcccc                                                                 <  7:23814‑M2/128‑78 (MQ=255)                                                                                                 tGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCTAGTACAGGCAGCAAAGGCTTCAGGTTACTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCAAGCGCa                                            >  1:253003/1‑149 (MQ=255)                                                                                                     cTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacaggcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttc                                              <  3:64554‑M2/143‑97 (MQ=255)                                                                                                     cTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacaggcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttc                                              >  4:64554‑M2/1‑47 (MQ=255)                                                                                                     cTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGc                                        >  3:163391/1‑149 (MQ=255)                                                                                                      ttttCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacaggcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaacc                                       <  1:317962‑M2/149‑104 (MQ=255)                                                                                                       tttCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAAaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaaccg                                      <  8:247542‑M2/149‑105 (MQ=255)                                                                                                        ttCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaaccgc                                     <  4:71196‑M2/149‑106 (MQ=255)                                                                                                            cgGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTc                                 <  4:34451/149‑1 (MQ=255)                                                                                                              ggCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGc                               <  5:27669/149‑1 (MQ=255)                                                                                                              ggCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGc                               >  3:166174/1‑149 (MQ=255)                                                                                                                   gCCCGCTTCGATAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCa                                                                                                                   <  1:76502/60‑1 (MQ=255)                                                                                                                   gCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCa                                                                                                                   >  2:76502/1‑60 (MQ=255)                                                                                                                    cccGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTc                         >  7:134362/1‑149 (MQ=255)                                                                                                                      cGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGc                       <  8:290261/149‑1 (MQ=255)                                                                                                                      cGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTACAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGc                       <  4:74575/149‑1 (MQ=255)                                                                                                                       gCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCt                      <  5:91474/149‑1 (MQ=255)                                                                                                                        cTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTg                     <  8:75928/149‑1 (MQ=255)                                                                                                                                 ggCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCgg            >  2:31472/1‑149 (MQ=255)                                                                                                                                  gCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCggg           <  4:166174/149‑1 (MQ=255)                                                                                                                                   cTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCggg           >  1:324147/1‑148 (MQ=255)                                                                                                                                              gcgAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCt  >  7:61519/1‑146 (MQ=255)                                                                                                                                              gcgAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCt  <  8:61519/146‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                             GTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCT  >  NC_002947/4094548‑4094834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.