New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4438181	31 (0.600)	4 (0.080)	4/248	NT	11.0%	coding (1341/1425 nt)	PP_3932	diguanylate cyclase
	?	NC_002947	= 4438272	36 (0.740)					coding (757/762 nt)	PP_3933	membrane protein

GGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGCAAGGCTATG  >  NC_002947/4438125‑4438420                                                                                                                                                    |                                                                                                                                                     ggTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCg                                                                                                                                                     >  1:156817‑M2/1‑148 (MQ=255)  gtgtGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCgg                                                                                                                                                    <  7:289626‑M2/149‑3 (MQ=255)        cAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagca                                                                                                                                              >  6:14075‑M2/1‑141 (MQ=255)         aGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTCGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcag                                                                                                                                             <  1:231386‑M2/149‑10 (MQ=255)         aGGCGGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACCGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcag                                                                                                                                             >  7:189400‑M2/1‑140 (MQ=255)              gCGACGCATACATGCCGGCCCCCAGCCACGACGAACTGCTGGCCAGTGCCGACCAGCCGCTGTAACGGGCCAAGGCCCGGGGCCGCAACCCCGTCGAACAGGCCGAAGCACCGCGCCTGGTCATCTGAACTAGCCGGACAGCAGGTccc                                                                                                                                        >  6:44997/1‑149 (MQ=255)               cGACGCAGACATGCCGGCCCCCACCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCa                                                                                                                                       <  3:145063/149‑1 (MQ=255)                   gCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGAc                                                                                                                                   <  8:251708/149‑1 (MQ=255)                        cATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCt                                                                                                                               <  2:303686/148‑1 (MQ=255)                         aTGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTg                                                                                                                             <  3:187106/149‑1 (MQ=255)                          tGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTgg                                                                                                                            <  2:231386/149‑1 (MQ=255)                                cccccAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCa                                                                                                                      <  3:227265/149‑1 (MQ=255)                                     aGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGcaca                                                                                                                 <  1:280853/149‑1 (MQ=255)                                              gaACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGc                                                                                                        <  7:48858/149‑1 (MQ=255)                                                  tgctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGAGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctg                                                                                                    <  1:89793‑M2/149‑51 (MQ=255)                                                     ggtacAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAgg                                                                                                  >  1:94989/5‑148 (MQ=255)                                                        ccAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACa                                                                                              <  8:181249/149‑1 (MQ=255)                                                         cAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAg                                                                                                                     >  4:95152/1‑125 (MQ=255)                                                         cAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAg                                                                                             >  2:14088/1‑149 (MQ=255)                                                         cAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAg                                                                                             >  5:232403/1‑149 (MQ=255)                                                           gTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcagttcgtcgcggctgggggccggcatgtctgcgtcgcagcctgccacaccg                                                                                            <  5:287231‑M2/148‑59 (MQ=255)                                                               cGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCcgcg                                                                                       <  6:48926/149‑1 (MQ=255)                                                                gACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAgg                                                                                                  >  6:329347/1‑137 (MQ=255)                                                                gACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAgg                                                                                                  <  5:329347/137‑1 (MQ=255)                                                                 aCCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGa                                                                                     <  8:289626/149‑1 (MQ=255)                                                                     ggCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACaaa                                                                                 <  6:232403/149‑1 (MQ=255)                                                                              ccGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCg                                                                             <  3:151868/144‑1 (MQ=255)                                                                              ccGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCg                                                                             >  4:151868/1‑144 (MQ=255)                                                                                gggCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCt                                                                      <  5:38354/149‑1 (MQ=255)                                                                                   ccAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGc                                                                   >  1:291387/1‑149 (MQ=255)                                                                                          ccGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACGGCTTGGCGATCAGCACACACAACAGCACCAgg                                                                                                  >  6:242244/1‑111 (MQ=255)                                                                                          ccGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACGGCTTGGCGATCAGCACACACAACAGCACCAgg                                                                                                  <  5:242244/111‑1 (MQ=255)                                                                                                    aaCCTCGTCGAACAGCCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGTCGATCAGCACACACAACATCACCAGGAACAGCCCTCGGACAAACCCGTCACCCTTGCGTACCGCCAGCCAGGTa                                                  <  5:44997/149‑1 (MQ=255)                                                                                                              aaCAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctgccacaccgatactcacggtaatctgcaggcgctggtcggcctgtgtcacgtgcaggtcct                                        >  2:89793‑M2/1‑39 (MQ=255)                                                                                                              aaCAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCCGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAgcg                                        >  8:17591/1‑149 (MQ=255)                                                                                                                   gCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGcc                                    >  6:78082/1‑148 (MQ=255)                                                                                                                           acaGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGtt                           >  5:7850/1‑149 (MQ=255)                                                                                                                            caGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTg                          >  4:165085/1‑149 (MQ=255)                                                                                                                                  cTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACt                    <  3:165085/149‑1 (MQ=255)                                                                                                                                       gATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCAt               >  6:230400/1‑149 (MQ=255)                                                                                                                                        aTCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCAt               <  5:78082/148‑1 (MQ=255)                                                                                                                                         tCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATgg             >  7:297284/1‑149 (MQ=255)                                                                                                                                             aaCTAGCCggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctgccacaccgatactcacggtaatctgcaggcgctggtcggcctgtgtcacgtgcaggtcctgtatggcgcggcgcaggcgttcggcg              >  6:287231‑M2/1‑8 (MQ=255)                                                                                                                                             aaCTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGc           >  6:50850/1‑147 (MQ=255)                                                                                                                                             aaCTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGc           >  2:275951/1‑147 (MQ=255)                                                                                                                                               cTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGCAAgg       >  2:1264/1‑149 (MQ=255)                                                                                                                                                  gCCGGCCAGCAGGTCCCACGACAGCTTGGAGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGCAAGGCTa    >  8:191242/1‑149 (MQ=255)                                                                                                                                                    cGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGCAAGGCTATg  <  1:291067/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGCAAGGCTATG  >  NC_002947/4438125‑4438420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.