New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5601631	36 (0.690)	4 (0.080)	4/246	NT	10.2%	coding (1851/5418 nt)	PP_4924	subtilase family serine protease
	?	NC_002947	= 5601675	37 (0.770)					coding (1807/5418 nt)	PP_4924	subtilase family serine protease

GACCGCCGCTGGCGATGATGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCGAGCGCTGC  >  NC_002947/5601528‑5601819                                                                                                                                                    |                                                                                                                                                 gACCGCCGCTGGCGATGATGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCt                                                                                                                                                  <  4:107051/148‑1 (MQ=255)    cgccgcTGGCGATGATGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTggca                                                                                                                                              >  4:234831‑M2/1‑145 (MQ=255)     gccgcTGGCGATGATGGCCTTACCCCGCACTCCTTGCGCGATGGGCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTggcac                                                                                                                                             >  8:151798‑M2/1‑144 (MQ=255)         cTGGCGATGATGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTggcac                                                                                                                                             >  6:118335‑M2/1‑140 (MQ=255)         cTGGCGATGATGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTggcac                                                                                                                                             <  5:118335‑M2/145‑6 (MQ=255)            gCGATGATGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCAc                                                                                                                                      <  1:224882/149‑1 (MQ=255)            gCGATGATGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCAc                                                                                                                                      <  4:259520/149‑1 (MQ=255)             cGATGATGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACg                                                                                                                                     <  1:83062/149‑1 (MQ=255)              gatgatGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTTATCACg                                                                                                                                     >  2:327295/1‑148 (MQ=255)                   tgTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACa                                                                                                                               <  5:81580/149‑1 (MQ=255)                     tCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCACTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACAtc                                                                                                                             <  4:268235/149‑1 (MQ=255)                       cTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACAtcgt                                                                                                                           >  8:76335/1‑149 (MQ=255)                            cccgcccgCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCGCACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCAGTGCCCTGCATGTTCGCCCCATCGTCGCTGGCAGGCAGCACGAATACATCGAcgccc                                                                                                                      >  3:199331/1‑149 (MQ=255)                             ccgcccgcCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTcgccag                                                                                                                     >  5:313965/1‑147 (MQ=255)                                           cgctGGTGAGCCCGGCCTTGGCCAAGTTCAGCCCCACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTTCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACTTCGTCGCCCGCCCCGCCGTGATAg                                                                                                       <  6:238999/146‑1 (MQ=255)                                            gATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAgg                                                                                                      >  7:270250/1‑149 (MQ=255)                                                gTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGtt                                                                                                  >  8:119769/1‑149 (MQ=255)                                                gTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGtt                                                                                                  <  5:277585/149‑1 (MQ=255)                                                 tccgCCCGGCCGTGGCCATGTTCAGCCGAACGCCCTGCTCCCCCACGATCAGTGCCGTGGCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTtg                                                                                                 <  4:199331/146‑1 (MQ=255)                                                     cccGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCccgccg                                                                                                             <  7:245504/133‑1 (MQ=255)                                                     cccGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCccgccg                                                                                                             >  8:245504/1‑133 (MQ=255)                                                          ccTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTgccaccg                                                                                        >  8:73603/1‑149 (MQ=255)                                                                           ccAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACt                                                                       >  6:146648/1‑149 (MQ=255)                                                                                   aTGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTg                                                               <  7:73603/149‑1 (MQ=255)                                                                                     gCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTggg                                                             >  8:161176/1‑149 (MQ=255)                                                                                           ccACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTggcactgatcgtgggggagcatggcgttgggctgaacatggccaaggccgggctgaccatcgcgcaaggcgggcggggtaaggacatcatc                                                       <  3:112706‑M2/149‑92 (MQ=255)                                                                                            cACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCgg                                                      >  7:292736/1‑149 (MQ=255)                                                                                             aCGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTggcactgatcgtgggggagcatggcgttgggctgaacatggccaaggccgggctgaccatcgcgcaaggcgggcggggtaaggacatcatcgc                                                     <  7:98891‑M2/149‑94 (MQ=255)                                                                                              cGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTggcactgatcgtgggggagcatggcgttgggctgaacatggccaaggccgggctgaccatcgcgcaaggcgggcggggtaaggacatcatcgc                                                     <  4:292022‑M2/148‑94 (MQ=255)                                                                                                aTCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCaa                                                  <  7:161176/149‑1 (MQ=255)                                                                                                  cAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGa                                                <  7:76335/149‑1 (MQ=255)                                                                                                   aGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGa                                                <  7:261868/148‑1 (MQ=255)                                                                                                    gTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGAca                                              >  3:103076/1‑149 (MQ=255)                                                                                                       ccGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGcc                                                                    >  5:81963/1‑124 (MQ=255)                                                                                                       ccGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGcc                                                                    <  6:81963/124‑1 (MQ=255)                                                                                                              gcgcCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCcgc                                                        >  7:150077/1‑129 (MQ=255)                                                                                                              gcgcCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCcgc                                                        <  8:150077/129‑1 (MQ=255)                                                                                                                gcCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTggcactgatcgtgggggagcatggcgttgggctgaacatggccaaggccgggctgaccatcgcgcaaggcgggcggggtaaggacatcatcgccagcggcggtcaacgcgga                                  >  4:112706‑M2/1‑37 (MQ=255)                                                                                                                  ccaccaTTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCt                                >  2:96603/1‑149 (MQ=255)                                                                                                                       aTTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCAGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGTGCCGCGGTCAAGACATCATCGCCCGCGCTGCCg                            >  1:45247/1‑148 (MQ=255)                                                                                                                            ccTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGc                      <  4:103076/149‑1 (MQ=255)                                                                                                                             cTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCg                     >  6:82932/1‑149 (MQ=255)                                                                                                                              tGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCcgcg                                                       <  2:202784/114‑1 (MQ=255)                                                                                                                              tGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCcgcg                                                       >  1:202784/1‑114 (MQ=255)                                                                                                                                cATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCt                  <  7:119769/149‑1 (MQ=255)                                                                                                                                     tCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTAc              <  6:313965/148‑1 (MQ=255)                                                                                                                                      cGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCAGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGc            >  1:226419/1‑149 (MQ=255)                                                                                                                                       gCCCAATCGTCGCTGGCCCTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGc            <  6:169067/148‑1 (MQ=255)                                                                                                                                         ccAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGc                              >  1:286475/1‑128 (MQ=255)                                                                                                                                         ccAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGc                              <  2:286475/128‑1 (MQ=255)                                                                                                                                                tcgCTGGCACGGATCACGAATACCTCGTCGCCCCCCCCCCCGTGATAGGTGTCGCCGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACCTCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCGAGCGCTgc  <  8:292736/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GACCGCCGCTGGCGATGATGTCCTTACCCCGCCCGCCTTGCGCGATGGTCAGCCCGGCCTTGGCCATGTTCAGCCCAACGCCATGCTCCCCCACGATCAGTGCCGTGTCGCGCCCACCATTGCCCTGCATGTTCGCCCAATCGTCGCTGGCACTGATCACGAATACATCGTCGCCCGCCCCGCCGTGATAGGTGTTGCTGCCACCGCCACCAACCAGCCAACTGCCCTCTGGGGCCGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCGAGCGCTGC  >  NC_002947/5601528‑5601819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.