Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 416,121 | G→C | 8.6% | D297H (GAC→CAC) | waaC → | ADP‑heptose‑‑LPS heptosyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 416,121 | 0 | G | C | 8.6% | 174.8 / 6.2 | 58 | D297H (GAC→CAC) | waaC | ADP‑heptose‑‑LPS heptosyltransferase |
Reads supporting (aligned to +/- strand): ref base G (26/27); new base C (2/3); total (28/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.22e-01 |
GGCAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAGCGCGTTGC > NC_002947/415982‑416268 | ggcAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCCCCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCtt > 7:170878/1‑149 (MQ=255) ggcAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCtt < 5:316619/149‑1 (MQ=255) ggcAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCtt > 1:5877/1‑149 (MQ=255) gcAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTCACTGGCCtgg < 1:15202/149‑3 (MQ=255) gcAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTCACTGGCCtgg < 7:256515/149‑3 (MQ=255) gcAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGACGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTg > 8:48848/1‑149 (MQ=255) cAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTgc < 2:300436/149‑1 (MQ=255) cAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTCACTGGCCtggt < 2:145398/149‑4 (MQ=255) cTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCcct > 8:166325/1‑149 (MQ=255) cTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCcct < 2:5877/149‑1 (MQ=255) tGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTgc < 6:179740/141‑1 (MQ=255) tGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTgc > 5:179740/1‑141 (MQ=255) tGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCcctgcctg < 1:281801/149‑1 (MQ=255) gCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACACGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCACTGACTGGCCTTGCGCTCCctgcctgc < 1:3481/148‑1 (MQ=255) gCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACACGGGCCTGACTGGC‑GCCTACGGACGCACCCAGATTCACCAGGCCACTGACTGGCCTTGCGCTCCctgcctgc < 1:8740/148‑1 (MQ=255) gCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCGTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCcctgcctg > 1:85312/1‑147 (MQ=255) gATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAgaagaa < 6:115991/149‑1 (MQ=255) aTACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGaagaag < 6:44671/149‑1 (MQ=255) tACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGt < 2:249420/149‑1 (MQ=255) cGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGCCGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCa > 4:59012/1‑149 (MQ=255) cGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCa > 1:196498/1‑149 (MQ=255) ggCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCAc < 8:240082/149‑1 (MQ=255) gCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCAcc < 6:20314/149‑1 (MQ=255) gcggcggcACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAgcgc < 7:181976/149‑1 (MQ=255) gcggcggcACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAgc < 7:31832/147‑1 (MQ=255) cggcggcACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGcc < 7:166325/149‑1 (MQ=255) ggcACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGAt > 4:242890/1‑148 (MQ=255) aCTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGAcc > 1:203104/1‑149 (MQ=255) aCTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGAcc > 3:317615/1‑149 (MQ=255) cccACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGtt < 2:307173/149‑1 (MQ=255) gCTGTTTGGCCCTACCAACCCGGGCCTGACTGGCAGCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGaaa > 1:44427/1‑149 (MQ=255) ccTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGcc > 3:252973/1‑149 (MQ=255) aaCCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTTCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCtgtg < 7:285006/149‑1 (MQ=255) cccGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCt < 7:48848/149‑1 (MQ=255) gggCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCa < 3:59012/149‑1 (MQ=255) gCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACt > 5:135098/1‑149 (MQ=255) ccTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCtgt < 3:154573/140‑1 (MQ=255) ccTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCtgt > 4:154573/1‑140 (MQ=255) tGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTg > 5:79642/1‑148 (MQ=255) gc‑gcCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAAt < 8:170878/149‑1 (MQ=255) tACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATccc > 2:76966/1‑147 (MQ=255) acggacCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCAtg > 3:264841/1‑149 (MQ=255) cggacCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCAtgt < 2:196498/149‑1 (MQ=255) acCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGc < 4:317615/149‑1 (MQ=255) aGATTCACCAGGCCAGTGACTGGAATTGCGAACCCTGCATGCAGAAGAAGTGAACATACAAACCGAGAGCCAATGACATGACCCGGTTCGAACTGAAACGCGAGTGGCCGATGTGCTTCACTCGCATGAAACCCGAGAATGTGGCGAGc > 7:47962/1‑149 (MQ=255) gcaaGGCCAGTCACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCtt > 6:191682/4‑148 (MQ=255) gcaaGGCCAGTCACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCtt > 1:46294/4‑148 (MQ=255) aCCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCtt < 3:242890/148‑1 (MQ=255) aCCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCtt > 2:168440/1‑148 (MQ=255) aCCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCtt < 6:135098/148‑1 (MQ=255) cAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACCAACCGCGCGCCGATGACCTGGCCCGGGTCGATCTGAAACGCGAGTGGTCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAg > 7:129645/1‑149 (MQ=255) cAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAg > 6:298737/1‑149 (MQ=255) cAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAg > 6:179785/1‑149 (MQ=255) cAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAg > 7:98173/1‑149 (MQ=255) aGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCTCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAgc < 1:76966/149‑1 (MQ=255) ggCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAgcg > 5:184725/1‑149 (MQ=255) aGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACAGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAGCGCGtt > 3:143237/1‑149 (MQ=255) tGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAGCGCGTtgc < 6:184725/149‑1 (MQ=255) | GGCAAAGGCCTGCGTGGCGGTCGATACCGGCCTTGGCCACCTGGCGGCGGCACTCGATGTGCCCACCCTTTCGCTGTTTGGCCCTACCAACCCGGGCCTGACTGGC‑GCCTACGGACGGACCCAGATTCACCAGGCCAGTGACTGGCCTTGCGCTCCCTGCCTGCAGAAGAAGTGCACCTACAAACCGAGCGCCGATGACCTGGCCCGGTTCGATCTGAAACGCGAGTGGCCGCTGTGCTTCACTCGCCTGAATCCCGAGCATGTGGCGAGCCGCTTGAGCGCGTTGC > NC_002947/415982‑416268 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |