| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,684,804 | G→C | 5.1% | R697G (CGC→GGC) | PP_4988 ← | signal transduction histidine kinase CheA/CheY‑like receiver |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,684,804 | 0 | G | C | 5.1% | 254.4 / 4.0 | 78 | R697G (CGC→GGC) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
| Reads supporting (aligned to +/- strand): ref base G (39/35); new base C (2/2); total (41/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 | |||||||||||
CGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTG > NC_002947/5684656‑5684947 | cGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTTTTCATGCAGGC‑TGGCCAggcg > 7:86489/1‑149 (MQ=255) ggCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGcggcgg > 5:302345/1‑149 (MQ=255) gCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGgcggcg < 4:232241/147‑1 (MQ=255) tGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGc < 2:109134/149‑1 (MQ=255) gTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGcc < 7:173515/149‑1 (MQ=255) ttGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGcc < 4:94277/148‑1 (MQ=255) ttGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGc < 7:25213/147‑1 (MQ=255) tgctgcCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTg > 3:157228/1‑149 (MQ=255) ctgcCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCGTGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTgg < 2:223880/148‑1 (MQ=255) ctgcCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTgg < 3:44590/148‑1 (MQ=255) ctgcCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTgg < 3:40478/148‑1 (MQ=255) ctgcCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGc > 7:77052/1‑149 (MQ=255) ctgcCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGc > 7:72703/1‑149 (MQ=255) tgcCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGc > 6:172315/1‑148 (MQ=255) ccAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCaa > 6:167573/1‑149 (MQ=255) aGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAAcc > 6:106281/1‑149 (MQ=255) aGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAAcc < 3:203909/149‑1 (MQ=255) gcgcGACAACAACGTCTCTGCATCGTGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGT‑TGGCCAGGCCGTGGACCGCCGCCTGGCCAGCCt < 7:161987/149‑1 (MQ=38) gcgcGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGgcggcg > 8:117543/1‑129 (MQ=255) gcgcGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGgcggcg < 7:117543/129‑1 (MQ=255) gcgACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGc > 8:119788/1‑149 (MQ=255) gTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGT‑TGGCCAGGCCGTGGACCGCCGCCTGGCCAGCCTGcat > 7:278158/1‑138 (MQ=37) gTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGT‑TGGCCAGGCCGTGGACCGCCGCCTGGCCAGCCTGcat < 8:278158/140‑3 (MQ=37) ctGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATAAGTTCcgcg > 8:182585/1‑149 (MQ=255) tGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCGACGGCCTGGCCAACCTGCTCGATCAGTTCcgc < 1:151681/147‑1 (MQ=255) tGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCcg < 1:240793/146‑1 (MQ=255) cATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCCGGCGGCGGTCCACCGCCTGGCCCACCTGCTCGATCAGTTCCGCGGCa > 6:274812/1‑149 (MQ=255) cATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCgg < 4:50523/147‑1 (MQ=255) aGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCggg > 1:155370/1‑149 (MQ=255) cAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGa < 2:89867/149‑1 (MQ=255) tCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCAAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATggcggc > 2:63942/1‑149 (MQ=255) ccATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCgg < 4:71088/138‑1 (MQ=255) ccATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCgg > 3:71088/1‑138 (MQ=255) catggcatggGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATggcggc > 3:106495/1‑147 (MQ=255) atggcatggGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAg < 8:144982/149‑1 (MQ=255) gcatggGCCAGGAAGCTGGCGACCCACTGCGGCTCACGCTCGCGGCGGCCGGCATGGGGCGGGTCTTCCTGCAGGC‑TGGCCAGGCGGCGGGCCACGGCCGGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGCTGGCGGCCAggg < 5:274812/148‑1 (MQ=255) gcatggGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAggg < 7:119788/148‑1 (MQ=255) tggGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGt < 4:157228/149‑1 (MQ=255) ggCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGc > 2:75028/1‑149 (MQ=255) gCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGc > 3:80420/1‑148 (MQ=255) gCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGACAACCTGCTCGATCAGTTCCTCTGCACCGGGGATGGCAGCCAGGTGCGTga > 4:4733/1‑147 (MQ=255) cAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTAt > 4:73246/1‑149 (MQ=255) gAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCACCCTGCTCGATCAGt < 7:274356/109‑1 (MQ=255) gAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGt > 8:274356/1‑109 (MQ=255) gCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTTTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTgcgc < 8:86489/149‑1 (MQ=255) gCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTgcg < 4:106495/148‑1 (MQ=255) gCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTgc < 2:256736/147‑1 (MQ=255) cAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCAGGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGc < 6:302345/149‑1 (MQ=255) ggATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGGTGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATg < 1:225737/149‑1 (MQ=255) gATAACGCTTGCTGCGGCAGGCATGGTGCGGGTCTTAATGCAGGC‑TGGCCAGGCGGCGGGCCAAGGAATGGCCAACCTGCTCGATCAGTTCCGCGGCCCCGGGGAGGGAGGCCATGGGCGTGATATCGAGTTGCGCCAAGCACAGATg > 2:200709/1‑148 (MQ=255) cGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGaacaa < 5:106281/149‑1 (MQ=255) cGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGaacaa > 5:89385/1‑149 (MQ=255) gctgcGGCCGGCATGGTGCGGGTCTTCATGCAGGCGTGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGAc > 1:48875/1‑149 (MQ=255) gctgcGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCCGCTCGATCAGTTCCGCGGCACCgg > 6:202209/1‑92 (MQ=255) gctgcGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCCGCTCGATCAGTTCCGCGGCACCgg < 5:202209/92‑1 (MQ=255) ctgcGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACcg > 1:149467/1‑149 (MQ=255) tgcGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCACGCCCAGATGGAACAACGACcgc > 8:196164/1‑149 (MQ=255) tgcGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGaa > 3:74054/1‑139 (MQ=255) tgcGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGaa < 4:74054/139‑1 (MQ=255) gccggcATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAg > 2:155431/1‑149 (MQ=255) gcATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTc > 2:121390/1‑149 (MQ=255) gcATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTc > 3:63266/1‑149 (MQ=255) cATGGTGCGGGTCTTCATGCAGGC‑TGTCCAGGAGGCGTTCCACGGACTGGCCAACCTGCTCGATCAGTTCATCGGCACCGGGTATGGCTGACAGGGGAGTGCTATCGAGTTGCGCCAAGACCAGATGGAACAAAGAACGCTCAGCCta > 4:241219/1‑147 (MQ=255) tGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAg < 1:75028/149‑1 (MQ=255) ggTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGccattcc < 2:149467/149‑1 (MQ=255) ggTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGccattc > 8:279403/1‑148 (MQ=255) gTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGccattcca > 3:258645/1‑149 (MQ=255) gTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGccattcca > 6:190993/1‑149 (MQ=255) tCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGccattccat > 5:166277/1‑149 (MQ=255) ttCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGGGTGCTATCGAGTTGCGCCAAGCCCAGAt < 1:181759/113‑1 (MQ=255) ttCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGAt < 1:176594/113‑1 (MQ=255) ttCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGAt > 2:181759/1‑113 (MQ=255) ttCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGAt > 2:176594/1‑113 (MQ=255) atcgagCAGGT‑TGGCCAGGCCGTGGACCGCCGCCTGGCCAGCCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCAttt > 7:272981/6‑149 (MQ=37) cATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCGAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCg > 5:64816/1‑149 (MQ=255) aTGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCg < 3:73246/148‑1 (MQ=255) aGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCAt > 7:191863/1‑149 (MQ=255) c‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTg < 4:63266/149‑1 (MQ=255) tGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTACGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTg > 4:109839/1‑148 (MQ=255) gCCAGGCGGCGGTCCACGGCCTGGCCAACCTTCTCGATCAGTTCCGCGGCACCTGGTATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCa < 1:63942/148‑1 (MQ=255) gCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCa < 6:89385/148‑1 (MQ=255) cAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTg > 7:133427/1‑149 (MQ=255) cAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTg < 1:155431/149‑1 (MQ=255) | CGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCATGGCATGGGCCAGGAAGCTGGCGACCAACTGCGGATCACGCTTGCTGCGGCCGGCATGGTGCGGGTCTTCATGCAGGC‑TGGCCAGGCGGCGGTCCACGGCCTGGCCAACCTGCTCGATCAGTTCCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTG > NC_002947/5684656‑5684947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |